GSC 220:  Heidelberg Graduate School of Mathematical and Computational Methods for the Sciences

• Subject Area: Mathematics ; Basic Research in Biology and Medicine ; Computer Science ; Medicine ; Physical Chemistry ; Water Research
• Term: from 2007 to 2019
• Project identifier: Deutsche Forschungsgemeinschaft (DFG) - Project number 39072701

• Final Report Year: 2019

Final Report Abstract

Scientific Computing – the science of developing cutting edge mathematical and computational methods to solve challenging problems in application sciences – is widely regarded as a key technology of the 21st century. High expectations from modeling, simulation and optimization, the data deluge from high-resolution and high-throughput experiments, the combination of data and process-oriented modeling and emerging demands from fields beyond the natural sciences provide challenges that must be met with innovative methodological research. The Interdisciplinary Center for Scientific Computing (IWR) is tackling such research questions highly successfully as one of the central institutions of Heidelberg University. The Heidelberg Graduate School of Mathematical and Computational Methods for the Sciences (HGS MathComp) is now an independent research institution serving as the core interdisciplinary doctoral training facility. A team of 50 research groups with 25 years of experience in structured doctoral training provided a unique starting point for a successful first and second period of funding. There is an enormous demand for young scientists who are well-trained in methods of scientific computing and its applications. The HGS MathComp meets this demand with a structured doctoral training program embedded in a highly interdisciplinary research environment that stimulates the development of new and powerful methods. The scientific curriculum is complemented by training key qualifications expected from future leaders in academia and industry. Early scientific independence and integration into the international scientific community is promoted by presentations at international conferences, research stays abroad and complemented by an international visitors and guest doctoral program embedded in a network of partner institutions. With more than 250 graduates and about 100 current excellent doctoral students HGS Math- Comp will now become a permanent institution continuously pursuing and improving its core services in cooperation with participating research institutions and departments as well as the graduate academy of the university. Encouraged by amazing successes in both funding periods the school will continue to concentrate on exploiting the university-wide potential for interdisciplinary cooperation as part of one of the bridge-building facilities in the strategy of the university. An integrated research-oriented master phase is part of the research-oriented teaching strategy of the university and the international master’s program ‘Scientific Computing’ established at the Faculty of Mathematics and Computer Science provides a tailored preparation for interdisciplinary research. Knowledge transfer between industry and academia is ensured by the established series of modeling days and the highly successful Heidelberg Collaboratory for Image Processing. The detailed sustainability plan will ensure a long term perspective for HGS MathComp as a top-level interdisciplinary endeavor well integrated into both Heidelberg university and the international research community.

Link to the final report

https://doi.org/10.2314/KXP:1698966601

Publications

• Integrating genomic and transcriptomic data into graph based approaches for defining essential reactions in the metabolic network of escherichia coli. In A. Hinneburg, editor, LWA 2007, pages 55–60. 2007
  K. Plaimas, M. Oswald, R. Eils, and R. König
  
• Random loop model for long polymers. Physical Review E, 76(5, 1), Nov 2007
  M. Bohn, D. W. Heermann, and R. van Driel
  (See online at https://doi.org/10.1103/PhysRevE.76.051805)
• Average crossing number of gaussian and equilateral chains with and without excluded volume. The European Physical Journal, 62(2):209–214, 2008
  P. M. Diesinger and D. W. Heermann
  (See online at https://doi.org/10.1140/epjb/e2008-00145-6)
• Inverse problem of lindenmayer systems on branching structures. In Modeling, simulation and optimization of complex processes, pages 163–185. 2008
  S. Chuai-Aree, W. Jäger, and H. G. Bock
  (See online at https://doi.org/10.1007/978-3-540-79409-7_11)
• Goal-oriented error control of the iterative solution of finite element equations. Journal of Numerical Mathematics, 17:143–172, 07 2009
  D. Meidner, R. Rannacher, and J. Vihharev
  (See online at https://doi.org/10.1515/JNUM.2009.009)
• Modeling of Asymmetric Cell Division in Hematopoietic Stem Cells-Regulation of Self-Renewal Is Essential for Efficient Repopulation. Stem Cells And Development, 18(3):377–385, Apr 2009
  A. Marciniak-Czochra, T. Stiehl, A. D. Ho, W. Jaeger, and W. Wagner
  (See online at https://doi.org/10.1089/scd.2008.0143)
• Reconstructing nonlinear dynamic models of gene regulation using stochastic sampling. BMC Bioinformatics, 10, Dec 28 2009
  J. Mazur, D. Ritter, G. Reinelt, and L. Kaderali
  (See online at https://doi.org/10.1186/1471-2105-10-448)
• When less can yield more - Computational preprocessing of MS/MS spectra for peptide identification. Proteomics, 9(21):4978–4984, Nov 2009
  B. Y. Renard, M. Kirchner, F. Monigatti, A. R. Ivanov, J. Rappsilber, D. Winter, J. A. J. Steen, F. A. Hamprecht, and H. Steen
  (See online at https://doi.org/10.1002/pmic.200900326)
• A multiscale model for red blood cell mechanics. Biomechanics and Modeling In Mechanobiology, 9(1):1–17, Feb 2010
  D. Hartmann
  (See online at https://doi.org/10.1007/s10237-009-0154-5)
• Adaptive finite element solution of eigenvalue problems. Journal of Numerical Mathematics, 18(4):303–327, 2010
  R. Rannacher, A. Westenberger, and W. Wollner
  (See online at https://doi.org/10.1515/jnum.2010.015)
• Electron-Transfer Properties of an Efficient Nonheme Iron Oxidation Catalyst with a Tetradentate Bispidine Ligand. Angewandte Chemie - International Edition, 49(14):2622–2625, 2010
  P. Comba, S. Fukuzumi, H. Kotani, and S. Wunderlich
  (See online at https://doi.org/10.1002/anie.200904427)
• Magnesium-Dependent Active-Site Conformational Selection in the Diels-Alderase Ribozyme. Journal of the American Chemical Society, 132(36):12587–12596, Sep 15 2010
  T. Berezniak, M. Zahran, P. Imhof, A. Jaeschke, and J. C. Smith
  (See online at https://doi.org/10.1021/ja101370e)
• Minimal curvature trajectories: Riemannian geometry concepts for slow manifold computation in chemical kinetics. Journal of Computational Physics, 229(18):6512–6533, Sep 1 2010
  D. Lebiedz, V. Reinhardt, and J. Siehr
  (See online at https://doi.org/10.1016/j.jcp.2010.05.008)
• PathWave: discovering patterns of differentially regulated enzymes in metabolic pathways. Bioinformatics, 26(9):1225–1231, May 1 2010
  G. Schramm, S. Wiesberg, N. Diessl, A.-L. Kranz, V. Sagulenko, M. Oswald, G. Reinelt, F. Westermann, R. Eils, and R. Koenig
  (See online at https://doi.org/10.1093/bioinformatics/btq113)
• Automated Detection and Segmentation of Synaptic Contacts in Nearly Isotropic Serial Electron Microscopy Images. PLoS One, 6(10), Oct 21 2011
  A. Kreshuk, C. N. Straehle, C. Sommer, U. Koethe, M. Cantoni, G. Knott, and F. A. Hamprecht
  (See online at https://doi.org/10.1371/journal.pone.0024899)
• Large eddy simulation of the unsteady flow-field in an idealized human mouth-throat configuration. Journal of Biomechanics, 44(16):2768–2774, 2011
  X. Cui and E. Gutheil
  (See online at https://doi.org/10.1016/j.jbiomech.2011.08.019)
• Measuring oxygen reduction/evolution reactions on the nanoscale. Nature Chemistry, 3(9):707–713, Sep 2011
  A. Kumar, F. Ciucci, A. N. Morozovska, S. V. Kalinin, and S. Jesse
  (See online at https://doi.org/10.1038/nchem.1112)
• Modeling of auto-catalytic halogen release and ozone depletion in polar regions. Journal of Physics, 318 (6 S.), 2011
  L. Cao and E. Gutheil
  (See online at https://doi.org/10.1088/1742-6596/318/7/072006)
• Optimization as an analysis tool for human complex problem solving. SIAM Journal on Optimization, 21(3):936–959, 2011
  S. Sager, C. M. Barth, H. Diedam, M. Engelhart, and J. Funke
  (See online at https://doi.org/10.1137/11082018X)
• Bichromatic particle streak velocimetry bPSV. Experiments In Fluids, 53(5):1405–1420, Nov 2012
  B. Voss, J. Stapf, A. Berthe, and C. S. Garbe
  (See online at https://doi.org/10.1007/s00348-012-1355-8)
• Efficient direct multiple shooting for nonlinear model predictive control on long horizons. Journal of Process Control, 22(3):540–550, 2012
  C. Kirches, L. Wirsching, H. G. Bock, and J. P. Schlöder
  (See online at https://doi.org/10.1016/j.jprocont.2012.01.008)
• Estimating parameters in optimal control problems. SIAM Journal on Scientific Computing, 34(3):A1707–A1728, 2012
  K. Hatz, J. P. Schloeder, and H. G. Bock
  (See online at https://doi.org/10.1137/110823390)
• Expression-dependent folding of interphase chromatin. PLoS One, 7(2012), 2012
  H. Jerabek and D. W. Heermann
  (See online at https://doi.org/10.1371/journal.pone.0037525)
• On the development and generalizations of Cahn- Hilliard equations within a thermodynamic framework. Zeitschrift für Angewandte Mathematik und Physik, 63(1):145–169, Feb 2012
  M. Heida, J. Malek, and K. R. Rajagopal
  (See online at https://doi.org/10.1007/s00033-011-0139-y)
• One Plus One Makes Three (for Social Networks). PLoS One, 7(4), Apr 6 2012
  E.-A. Horvat, M. Hanselmann, F. A. Hamprecht, and K. A. Zweig
  (See online at https://doi.org/10.1371/journal.pone.0034740)
• Rif2 Promotes a Telomere Fold-Back Structure through Rpd3L Recruitment in Budding Yeast. PLoS Genetics, 8(9), Sep 2012
  H. Poschke, M. Dees, M. Chang, S. Amberkar, L. Kaderali, R. Rothstein, and B. Luke
  (See online at https://doi.org/10.1371/journal.pgen.1002960)
• Similarity analysis of cell movements in video microscopy. IEEE Symposium on Biological Data Visualization 2012, Biovis 2012 - Proceedings, Pages 69–76, 2012
  J. Fangerau, B. Höckendorf, J. Wittbrodt, and H. Leitte
  (See online at https://doi.org/10.1109/BioVis.2012.6378595)
• Unwrapping of Nucleosomal DNA Ends: A Multiscale Molecular Dynamics Study. Biophysical Journal, 102(4):849–858, Feb 22 2012
  K. Voltz, J. Trylska, N. Calimet, J. C. Smith, and J. Langowski
  (See online at https://doi.org/10.1016/j.bpj.2011.11.4028)
• A systems medicine research approach for studying alcohol addiction. Addiction biology, 18(6):883–896, 2013
  R. Spanagel, G. Koehr, F. Matthäus, H. R. Noori, and W. H. Sommer
  (See online at https://doi.org/10.1111/adb.12109)
• Adaptive finite element analysis of nonlinear problems. Journal of numerical mathematics, 21(1):23–62, 2013
  R. Rannacher and J. Vihharev
  (See online at https://doi.org/10.1515/jnum-2013-0002)
• Chromosome segregation by the Escherichia coli Min system. Molecular Systems Biology, 9, Sep 2013
  B. Di Ventura, B. Knecht, H. Andreas, W. J. Godinez, M. Fritsche, K. Rohr, W. Nickel, D. W. Heermann, and V. Sourjik
  (See online at https://doi.org/10.1038/msb.2013.44)
• COAL: a generic modelling and prototyping framework for convex optimization problems of variational image analysis. Optimization Methods & Software, 28(5):1081–1094, Oct 1 2013
  D. Breitenreicher, J. Lellmann, and C. Schnoerr
  (See online at https://doi.org/10.1080/10556788.2012.672571)
• Computational and experimental analysis identified 6-diazo-5-oxonorleucine as a potential agent for treating infection by Plasmodium falciparum. Infection Genetics and Evolution, 20:389–395, Dec 2013
  K. Plaimas, Y. Wang, S. O. Rotimi, G. Olasehinde, S. Fatumo, M. Lanzer, E. Adebiyi, and R. Koenig
  (See online at https://doi.org/10.1016/j.meegid.2013.09.019)
• Eulerian techniques for fluid-structure interactions. In A. Abdulle, S. Deparis, D. Kreßner, F. Nobile, and M. Picasso, editors, Numerical Mathematics and Advanced Applications - ENUMATH 2013, pages 745–754. 2015
  S. Frei, T. Richter, and T. Wick
  (See online at https://doi.org/10.1007/978-3-319-10705-9_74)
• Identifying a parameterisation of the soil water retention curve from on-ground gpr measurements. Hydrology and Earth System Sciences Discussions, 17(2):611–618, 2013
  A. Dagenbach, J. S. Buchner, P. Klenk, and K. Roth
  (See online at https://doi.org/10.5194/hess-17-611-2013)
• Integer programming models for the target visitation problem. In Proceedings of the 16th International Multiconference Information Society - IS 2013, Pages 569–572, 2013
  A. Hildenbrandt, G. Reinelt, and O. Heismann
  
• Optimality Bounds for a Variational Relaxation of the Image Partitioning Problem. Journal of Mathematical Imaging and Vision, 47(3, Si):239–257, Nov 2013
  J. Lellmann, F. Lenzen, and C. Schnoerr
  (See online at https://doi.org/10.1007/s10851-012-0390-7)
• Organism-adapted specificity of the allosteric regulation of pyruvate kinase in lactic acid bacteria. PLoS ONE, 9, 2013
  N. V. Veith, A. Feldman-Salit, U. Kummer, and R. C. Wade
  (See online at https://doi.org/10.1371/journal.pcbi.1003159)
• Replication vesicles are load- and choke-points in the hepatitis c virus lifecycle. PLoS Pathogens, 9, 2013
  M. Binder, N. Sulaimanov, S. M. Lenz, J. P. Schlöder, R. Bartenschlager, V. Lohmann, and L. Kaderali
  (See online at https://doi.org/10.1371/journal.ppat.1003561)
• Uncertainty Quantification in Complex Simulation Models Using Ensemble Copula Coupling. Statistical Science, 28(4, Si):616–640, Nov 2013
  R. Schefzik, T. L. Thorarinsdottir, and T. Gneiting. Uncertainty Quantification in Complex Simulation Models Using Ensemble Copula Coupling.
  (See online at https://doi.org/10.1214/13-STS443)
• A Case Study on a Quality Assurance Process for a Scientific Framework. Computing in Science & Engineering, 16(3):58–66, May-Jun 2014
  H. Remmel, B. Paech, C. Engwer, and P. Bastian
  (See online at https://doi.org/10.1109/MCSE.2014.57)
• Depletion of the chromatin looping proteins ctcf and cohesin causes chromatin compaction. PLoS Computational Biology, 10(2014), 2014
  M. Tark-Dame, H. Jerabek, and D. W. Heermann
  (See online at https://doi.org/10.1371/journal.pcbi.1004716)
• Detection of amines with extended distyrylbenzenes by strip assays. The Journal of Organic Chemistry, 79(14):6634–6645, 2014
  J. Kumpf, J. Freudenberg, K. M. Fletcher, A. Dreuw, and U. H. F. Bunz
  (See online at https://doi.org/10.1021/jo501129d)
• How chromatin looping and nuclear envelope attachment affect genome organization in eukaryotic cell nuclei. International Review of Cell and Molecular Biology, 307:351–381, 2014
  H. Jerabek and D. W. Heermann
  (See online at https://doi.org/10.1016/b978-0-12-800046-5.00010-2)
• Modeling and simulation of tropospheric ozone depletion in the polar spring. In Fundamental issues and perspectives in fluid mechanics, industrial and environmental applications of fluid mechanics, issues and perspectives in automotive flows, gas-solid flows. American Society of Mechanical Engineers, 2014
  L. Cao and E. Gutheil
  (See online at https://doi.org/10.1115/FEDSM2014-22045)
• Modeling and simulation of water and pvp/water evaporating spray flows using the direct quadrature method of moments. Atomization and Sprays, 24(5):403–429, 2014
  S. R. Gopireddy, R. M. Humza, and E. Gutheil
  (See online at https://doi.org/10.1615/AtomizSpr.2014008479)
• Spike patterns in a reaction-diffusion ODE model with turing instability. Mathematical Methods in the Applied Sciences, 37(9):1377–1391, 2014
  S. Härting and A. Marciniak-Czochra
  (See online at https://doi.org/10.1002/mma.2899)
• The affinely invariant distance correlation. Bernoulli, 20(4):2305–2330, Nov 2014
  J. Dueck, D. Edelmann, T. Gneiting, and D. Richards
  (See online at https://doi.org/10.3150/13-BEJ558)
• A new model for the aerobic metabolism of yeast allows the detailed analysis of the metabolic regulation during glucose pulse. Biophysical Chemistry, 206:40–57, 2015
  D. Kesten Weth, U. Kummer, S. Sahle, and K. Hübner
  (See online at https://doi.org/10.1016/j.bpc.2015.06.010)
• Adapting algebraic diagrammatic construction schemes for the polarization propagator to problems with multi-reference electronic ground states exploiting the spin-flip ansatz. Journal of Chemical Physics, 143(12), Sep 28 2015
  D. Lefrancois, M. Wormit, and A. Dreuw
  (See online at https://doi.org/10.1063/1.4931653)
• An Active-Set Quadratic Programming Method Based On Sequential Hot-Starts. SIAM Journal on Optimization, 25(2):967–994, 2015
  T. Johnson, C. Kirches, and A. Wächter
  (See online at https://doi.org/10.1137/130940384)
• Application of reactive transport modeling to growth and transport of microorganisms in the capillary fringe. Vadose Zone Journal, 14(5):1–17, 2015
  P. Hron, P. Bastian, and O. Ippisch
  (See online at https://doi.org/10.2136/vzj2014.07.0092)
• Crucial HSP70 co-chaperone complex unlocks metazoan protein disaggregation. Nature, 524(7564):247+, Aug 13 2015
  N. B. Nillegoda, J. Kirstein, A. Szlachcic, M. Berynskyy, A. Stank, F. Stengel, K. Arnsburg, X. Gao, A. Scior, R. Aebersold, D. L. Guilbride, R. C. Wade, R. I. Morimoto, M. P. Mayer, and B. Bukau
  (See online at https://doi.org/10.1038/nature14884)
• A weakly penalized discontinuous galerkin method for radiation in dense, scattering media. Computational methods in applied mathematics, 16(4):563–577, 2016
  G. Kanschat and J. P. Lucero Lorca
  (See online at https://doi.org/10.1515/cmam-2016-0023)
• Advances in Quantum Mechanochemistry: Electronic Structure Methods and Force Analysis. Chemical Reviews, 116(22):14137–14180, Nov 23 2016
  T. Stauch and A. Dreuw
  (See online at https://doi.org/10.1021/acs.chemrev.6b00458)
• Asymmetric mono- and dinuclear Ga-III and Zn-II complexes as models for purple acid phosphatases. Journal of Inorganic Biochemistry, 162:343–355, Sep 2016
  S. Bosch, P. Comba, L. R. Gahan, and G. Schenk
  (See online at https://doi.org/10.1016/j.jinorgbio.2015.12.028)
• Cooperative data fusion of transmission and surface scan for improving limited-angle computed tomography reconstruction. NDT & E International, 83:24–31, Oct 2016
  Y. Liu, A. Beyer, P. Schuetz, J. Hofmann, A. Flisch, and U. Sennhauser
  (See online at https://doi.org/10.1016/j.ndteint.2016.05.003)
• Knots “Choke Off” Polymers upon Stretching. Angewandte Chemie - International Edition, 55(2):811–814, Jan 11 2016
  T. Stauch and A. Dreuw
  (See online at https://doi.org/10.1002/anie.201508706)
• Mass concentration in a nonlocal model of clonal selection. Journal of Mathematical Biology, 73(4):1001–1033, 2016
  J.-E. Busse, P. Gwiazda, and A. Marciniak-Czochra
  (See online at https://doi.org/10.1007/s00285-016-0979-3)
• Mathematical modeling and simulation of the evolution of plaques in blood vessels. Journal of Mathematical Biology, 72(4, Si):973–996, Mar 2016
  Y. Yang, W. Jaeger, M. Neuss-Radu, and T. Richter
  (See online at https://doi.org/10.1007/s00285-015-0934-8)
• The deal.ii library, version 8.3. Archive of numerical software, 4(100):1–11, 2016
  W. Bangerth, G. Kanschat, and M. Maier
  (See online at https://doi.org/10.11588/ans.2016.100.23122)
• The Radical Anion and Dianion of Tetraazapentacene. Angewandte Chemie - International Edition, 55(35):10498–10501, Aug 22 2016
  L. Ji, M. Haehnel, I. Krummenacher, P. Biegger, F. L. Geyer, O. Tverskoy, M. Schaffroth, J. Han, A. Dreuw, T. B. Marder, and U. H. F. Bunz
  (See online at https://doi.org/10.1002/anie.201603177)
• An objective comparison of cell-tracking algorithms. Nature Methods, 14(12):1141+, Dec 2017
  V. Ulman, M. Maska, K. E. G. Magnusson, O. Ronneberger, C. Haubold, N. Harder, P. Matula, P. Matula, D. Svoboda, M. Radojevic, I. Smal, K. Rohr, J. Jalden, H. M. Blau, O. Dzyubachyk, B. Lelieveldt, P. Xiao, Y. Li, S.-Y. Cho, A. C. Dufour, J.-C. Olivo-Marin, C. C. Reyes-Aldasoro, J. A. Solis-Lemus, R. Bensch, T. Brox, J. Stegmaier, R. Mikut, S. Wolf, F. A. Hamprecht, T. Esteves, P. Quelhas, O. Demirel, L. Malmstrom, F. Jug, P. Tomancak, E. Meijering, A. Munoz-Barrutia, M. Kozubek, and C. Ortiz-de Solorzano
  (See online at https://doi.org/10.1038/nmeth.4473)
• Distance correlation coefficients for Lancaster distributions. Journal of Multivariate Analysis, 154:19–39, Feb 2017
  J. Dueck, D. Edelmann, and D. Richards
  (See online at https://doi.org/10.1016/j.jmva.2016.10.012)
• Dopelib: differential equations and optimization environment. Archive of Numerical Software, 5(2):1–14, 2017
  C. Goll, T. Wick, and W. Wollner
  (See online at https://doi.org/10.11588/ans.2017.2.11815)
• High performance computing for cognitionguided cardiac surgery. In H. G. Bock, H. X. Phu, R. Rannacher, and J. P. Schlöder, editors, Modeling, Simulation and Optimization of Complex Processes HPSC 2015, pages 205–221. 2017
  N. Schoch, R. De Simone, and V. Heuveline
  (See online at https://doi.org/10.1007/978-3-319-67168-0_17)
• Multicut brings automated neurite segmentation closer to human performance. Nature Methods, 14(2):101–102, Feb 2017
  T. Beier, C. Pape, N. Rahaman, L. Prange, S. Berg, D. D. Bock, A. Cardona, G. W. Knott, S. M. Plaza, L. K. Scheffer, U. Koethe, A. Kreshuk, and F. A. Hamprecht
  (See online at https://doi.org/10.1038/nmeth.4151)
• Numerical modeling of heat exchange and unsaturatedsaturated flow in porous media. Computers & Mathematics With Applications, 77(6):1668–1680, Mar 15 2019. 7th International Conference on Advanced Computational Methods in Engineering (ACUMEN), Ghent Univ., Ghent, Belgium, Sep 18-22, 2017
  J. Kacur, P. Mihala, and M. Toth
  (See online at https://doi.org/10.1016/j.camwa.2018.06.009)
• Optimal control based stiffness identification of an ankle-foot orthosis using a predictive walking model. Frontiers in computational neuroscience, 11, 2017
  M. Sreenivasa, M. Millard, M. L. Felis, K. Mombaur, and S. I. Wolf
  (See online at https://doi.org/10.3389/fncom.2017.00023)
• Optogenetically stimulating intact rat corticospinal tract post-stroke restores motor control through regionalized functional circuit formation. Nature Communications, 8, 2017
  A.-S. Wahl, U. Büchler, B. Brattoli, and B. Ommer
  (See online at https://doi.org/10.1038/s41467-017-01090-6)
• Partial stability for nonlinear model predictive control. Automatica, 78:14–19, Apr 2017
  H. C. La, A. Potschka, and H. G. Bock
  (See online at https://doi.org/10.1016/j.automatica.2016.11.047)
• Preparation, Properties, and Structures of the Radical Anions and Dianions of Azapentacenes. Journal of the American Chemical Society, 139(44):15968–15976, Nov 8 2017
  L. Ji, A. Friedrich, I. Krummenacher, A. Eichhorn, H. Braunschweig, M. Moos, S. Hahn, F. L. Geyer, O. Tverskoy, J. Han, C. Lambert, A. Dreuw, T. B. Marder, and U. H. F. Bunz
  (See online at https://doi.org/10.1021/jacs.7b09460)
• Rbdl: an efficient rigid-body dynamics library using recursive algorithms. Autonomous Robots, 41(2):495–511, 2017
  M. L. Felis
  (See online at https://doi.org/10.1007/s10514-016-9574-0)
• Self-supervised learning of pose embeddings from spatiotemporal relations in videos. In Proceedings of the IEEE International Conference on Computer Vision (ICCV), pages 4308–4317, 2017
  Ö. Sümer, T. Dencker, and B. Ommer
  (See online at https://doi.org/10.1109/ICCV.2017.461)
• System testing in scientific numerical software frameworks using the example of dune. Archive of Numerical Software, 5(1):151–168, 2017
  D. Kempf and T. Koch
  (See online at https://doi.org/10.11588/ans.2017.1.27447)
• Time-resolved measurement of interatomic coulombic decay induced by to-photon double excitation of ne2. Physical Review Letters, 118 (2017)
  T. Takanashi, G. Jabbari, N. V. Golubev, L. S. Cederbaum, and A. I. Kuleff
  (See online at https://doi.org/10.1103/PhysRevLett.118.033202)
• A phenomenological model of the time course of maximal voluntary isometric contraction force for optimization of complex loading schemes. European Journal of Applied Physiology, 118(12):2587–2605, Dec 2018
  J. L. Herold, C. Kirches, and J. P. Schloeder
  (See online at https://doi.org/10.1007/s00421-018-3983-z)
• A stable and high-order accurate discontinuous galerkin based splitting method for the incompressible navier–stokes equations. Journal of Computational Physics, 356:220 – 239, 2018
  M. Piatkowski, S. Müthing, and P. Bastian
  (See online at https://doi.org/10.1016/j.jcp.2017.11.035)
• An Adaptive Newton Algorithm for Optimal Control Problems with Application to Optimal Electrode Design. Journal Of Optimization Theory and Applications, 177(2):498–534, May 2018
  T. Carraro, S. Dorsam, S. Frei, and D. Schwarz
  (See online at https://doi.org/10.1007/s10957-018-1242-4)
• Augmented Reality Meets Computer Vision: Efficient Data Generation for Urban Driving Scenes. International Journal Of Computer Vision, 126(9, Si):961–972, Sep 2018
  H. Abu Alhaija, S. K. Mustikovela, L. Mescheder, A. Geiger, and C. Rother
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• Computational design of a molecular triple photoswitch for wavelength-selective control. Chemical Science, 9(46):8665–8672, Dec 14 2018
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