GRK 1558:  Nonequilibrium Collective Dynamics in Condensed Matter and Biological Systems

• Subject Area: Condensed Matter Physics ; Basic Research in Biology and Medicine ; Statistical Physics, Nonlinear Dynamics, Complex Systems, Soft and Fluid Matter, Biological Physics
• Term: from 2009 to 2018
• Project identifier: Deutsche Forschungsgemeinschaft (DFG) - Project number 87159868

• Final Report Year: 2018

Final Report Abstract

Nonequilibrium collective dynamics is ubiquitous in science, nature, and even daily life as the Mexican wave in a stadium or the rhythmic applause in a concert demonstrate. The Research Training Group studied collective dynamics of interacting entities in the microscopic world, where they are subject to noise and where they constantly dissipate energy into their environment. For this reason we assembled researchers working in three focused research areas on hard/ soft condensed matter and on biological systems, in order to explore the topic in its breadth. In addition, by identifying common methods and similarities in the governing dynamic equations on different length scales, we were able to obtain a more comprehensive understanding of nonequilibrium collective phenomena in different system classes and to generate new research, which would have not been possible without the structure of the RTG. In the first project area we addressed non-linear transport and quantum optics in semiconductor nanostructures. We concentrated on the non-linear dynamics of quantumdot lasers, light-matter interaction in different types of dissipative quantum systems, as well as on quantum criticality and coupled quantum systems including networks. Colloidal quantum dots and a systematic bifurcation analysis gave important links to the other project areas. Second, soft-matter systems driven into nonequilibrium by external fields show nontrivial response and structure formation. In the RTG we worked on (active) colloidal dispersions under magnetic fields and flow, protein machines at fluid interfaces (or biomembranes), and the viscoelastic response of polymer networks. The analysis of the pulsating flow of a dense colloidal dispersion in a microchannel or the weak non-linear analysis of pattern formation in active matter flow was strongly stimulated by the the environment of the RTG. Third, active media, cell motility, and nonlinear waves were studied with special emphasis on their chemical regulation. In particular, we addressed bacterial systems, protoplasmic droplets, and flat membrane protrusions. Again, pattern formation in the collective motion of bacteria, on excitable networks, and in the cytoplasm of protoplasmic droplets was a unifying theme for the biological systems and provided connections to the other project areas. Finally, right from the start the RTG identified active motion as a dynamic and growing research field in the international community and contributed with own work to its development. Our qualification program aimed at educating the Ph.D. students to become independent researchers or professionals that compete on an international stage at the highest level either in academia or in industry. Besides regular lecture courses, the program had a strong international component. It promoted the presentation and rhetorical skills of our students through active participation in conferences and seminars and by a lively guest program. Highlights were our international conferences on Nonequilibrium collective dynamics in condensed matter and biological systems, which were well regarded in the international community. All these measure ideally prepared our students for the academic or industrial job market.

Publications

• Carrier heating in light-emitting quantum-dot heterostructures at low injection currents, Phys. Rev. B 80, 245401 (2009)
  J. Wolters, M.-R. Dachner, E. Malic, M. Richter, U. Woggon, and A. Knorr
  (See online at https://doi.org/10.1103/physrevb.80.245401)
• Coupled Carrier- Phonon Dynamics in Light Emitting Quantum-Dot Heterostructures: Switch on Dynamics and Carrier Heating, Conference on Lasers and Electro-Optics / International Quantum Electronics Conference, JTuD108 (2009)
  J. Wolters, M.-R. Dachner, M. Richter, A. Knorr, and U. Woggon
  (See online at https://doi.org/10.1364/cleo.2009.jtud108)
• Dry and wet interfaces: Influence of solvent particles on molecular recognition, Phys. Rev. E 79, 041908 (2009)
  J. Taktikos and H. Behringer
  (See online at https://doi.org/10.1103/physreve.79.041908)
• Effective Hamiltonian Approach to Multiphonon Effects in Self Assembled Quantum Dots, Conference on Lasers and Electro-Optics / International Quantum Electronics Conference, JWA119 (2009)
  M.-R. Dachner, J. Wolters, A. Knorr, and M. Richter
  (See online at https://doi.org/10.1364/CLEO.2009.JWA119)
• Phonon Interaction on a Single Quantum Dot Emission Line, Conference on Lasers and Electro-Optics / International Quantum Electronics Conference, IWD7 (2009)
  E. Stock, A. Baumgartner, M.-R. Dachner, T. Warming, A. Schliwa, A. Patanè, L. Eaves, M. Richter, A. Knorr, M. Henini, and D. Bimberg
  (See online at https://doi.org/10.1364/iqec.2009.iwd7)
• Theory of electron dynamics in light emitting quantum dot devices, European Conference on Lasers and Electro-Optics 2009 and the European Quantum Electronics Conference, 1 (2009)
  M. Richter, E. Malic, J.-E. Kim, M.-R. Dachner, J. Wolters, U. Woggon, and A. Knorr
  (See online at https://doi.org/10.1109/cleoe-eqec.2009.5192178)
• Three-level mixing and dark states in transport through quantum dots, Phys. Rev. B 80, 235321 (2009)
  C. Emary, C. Pöltl, and T. Brandes
  (See online at https://doi.org/10.1103/physrevb.80.235321)
• Two-particle dark state in the transport through a triple quantum dot, Phys. Rev. B 80, 115313 (2009)
  C. Pöltl, C. Emary, and T. Brandes
  (See online at https://doi.org/10.1103/physrevb.80.115313)
• A model for oscillation and pattern formation in protoplasmic droplets of Physarum polycephalum, Eur. Phys. J. Special Topics 191, 159 (2010)
  M. Radszuweit, H. Engel, and M. Bär
  (See online at https://doi.org/10.1140/epjst/e2010-01348-2)
• Electrical excitation of the human heart and the effect of contraction, Proc. ESGCO 2010, (2010)
  S. Fruhner, H. Engel and M. Bär
  
• Formation dynamics of an entangled photon pair — a temperature dependent analysis, Phys. Rev. B 81, 195319 (2010)
  A. Carmele, F. Milde, M.-R. Dachner, M. B. Harouni, R. Roknizadeh, M. Richter, and A. Knorr
  (See online at https://doi.org/10.1103/physrevb.81.195319)
• Leading-edge-gel coupling in lamellipodium motion, Phys. Rev. E 82, 051925 (2010)
  J. Zimmermann, M. Enculescu, and M. Falcke
  (See online at https://doi.org/10.1103/physreve.82.051925)
• Modeling of Protrusion Phenotypes Driven by the Actin-Membrane Interaction, Biophys. J. 98, 1571 (2010)
  M. Enculescu, M. Sabouri-Ghomi, G. Danuser, and M. Falcke
  (See online at https://doi.org/10.1016/j.bpj.2009.12.4311)
• Modeling quantum dot lasers with optical feedback, sensitivity of bifurcation scenarios, Phys. Status Solidi B 247, 829 (2010)
  C. Otto, K. Lüdge, and E. Schöll
  (See online at https://doi.org/10.1002/pssb.200945434)
• Modelling the influence of cardiac motion on electrical excitation and the magnetocardiogram, Comput. Cardiol. 37, 867 (2010)
  S. Fruhner, H. Engel, and M. Bär
  
• On two-dimensionalization of threedimensional turbulence in shell models, Eur. Phys. J. 73, 447 (2010)
  S. Chakraborty, M. H. Jensen, and A. Sarkar
  (See online at https://doi.org/10.1140/epjb/e2010-00003-0)
• Protein Folding Dynamics and Structure Prediction, Ph.D. thesis, TU Darmstadt (2010)
  K. Wolff
  
• Renormalization Group for nonlinear oscillators in the absence of linear restoring force, Europhys. Lett. 91, 60004 (2010)
  A. Sarkar and J. K. Bhattacharjee,
  (See online at https://doi.org/10.1209/0295-5075/91/60004)
• Speed of Markovian relaxation toward the ground state, Phys. Rev. A 81, 012102 (2010)
  M. Vogl, G. Schaller, and T. Brandes
  (See online at https://doi.org/10.1103/physreva.81.012102)
• Theory of carrier and photon dynamics in quantum dot light emitters, Phys. Status Solidi B 247, 809 (2010)
  M.-R. Dachner, E. Malic, M. Richter, A. Carmele, J. Kabuss, A. Wilms, J.-E. Kim, G. Hartmann, J. Wolters, U. Bandelow, and A. Knorr
  (See online at https://doi.org/10.1002/pssb.200945433)
• Theory of few photon dynamics in electrically pumped light emitting quantum dot devices, Physics and Simulation of Optoelectronic Devices XVIII 7597, 75971P (2010)
  A. Carmele, M.-R. Dachner, J. Wolters, M. Richter, and A. Knorr
  (See online at https://doi.org/10.1117/12.842158)
• Wave propagation in heterogeneous bistable and excitable media, Eur. Phys. J. Spec. Top. 187, 31 (2010)
  S. Alonso, J. Löber, M. Bär, and H. Engel
  (See online at https://doi.org/10.1140/epjst/e2010-01268-1)
• Acoustic and optical phonon scattering in a single In(Ga)As quantum dot, Phys. Rev. B 83, 041304 (2011)
  E. Stock, M.-R. Dachner, T. Warming, A. Schliwa, A. Lochmann, A. A. Hoffmann, I. Toropov, A. K. Bakarov, I. A. Derebezov, M. Richter, V. A. Haisler, A. Knorr, and D. Bimberg
  (See online at https://doi.org/10.1103/physrevb.83.041304)
• Actin-based propulsion of spatially extended objects, New J. Phys. 13, 053040 (2011)
  M. Enculescu and M. Falcke
  (See online at https://doi.org/10.1088/1367-2630/13/5/053040)
• Active colloidal suspensions exhibit polar order under gravity, Phys. Rev. Lett. 107, 058301 (2011)
  M. Enculescu and H. Stark
  (See online at https://doi.org/10.1103/physrevlett.107.058301)
• Center or limit cycle: renormalization group as a probe, Eur. Phys. J. D 64, 479 (2011)
  A. Sarkar, J. K. Bhattacharjee, S. Chakraborty, and D. B. Banerjee
  (See online at https://doi.org/10.1140/epjd/e2011-20060-1)
• Counting statistics of collective photon emissions, Ann. Phys. (N.Y.) 326, 2827 (2011)
  M. Vogl, G. Schaller, and T. Brandes
  (See online at https://doi.org/10.1016/j.aop.2011.07.008)
• Cross-streamline migration of a semiflexible polymer in a pressure driven flow, J. Chem. Phys. 135, 165101 (2011)
  S. Reddig and H. Stark
  (See online at https://doi.org/10.1063/1.3656070)
• Crossover from Normal to Anomalous Diffusion in Systems of Field-Aligned Dipolar Particles, Phys. Rev. Lett. 106, 038301 (2011)
  J. Jordanovic, S. Jäger, and S. H. L. Klapp
  (See online at https://doi.org/10.1103/physrevlett.106.038301)
• Decay dynamics of excitonic polarons in InAs/GaAs quantum dots, J. Appl. Phys. 110, 074303 (2011)
  S. Werner, J. S. Reparaz, M. R. Wagner, P. Zimmer, N. N. Ledentsov, J. Kabuss, M.- R. Dachner, M. Richter, A. Knorr, C. Thomsen, and A. Hoffmann
  (See online at https://doi.org/10.1063/1.3639310)
• Feedback stabilization of pure states in quantum transport, Phys. Rev. B 84, 085302 (2011)
  C. Pöltl, C. Emary, and T. Brandes
  (See online at https://doi.org/10.1103/physrevb.84.085302)
• Filament capping and nucleation in actinbased motility, Eur. Phys. J. Special Topics 191, 147 (2011)
  M. Faber, M. Enculescu, and M. Falcke
  (See online at https://doi.org/10.1140/epjst/e2010-01347-3)
• Microscopic study of relaxation oscillations in quantum-dot VCSELs, Phot. Nano. Fund. Appl. 9, 337 (2011)
  J. E. Kim, M.-R. Dachner, A. Wilms, M. Richter, and E. Malic
  (See online at https://doi.org/10.1016/j.photonics.2011.04.004)
• Modeling a self-propelled autochemotactic walker, Phys. Rev. E 84, 041924 (2011)
  J. Taktikos, V. Zaburdaev, and H. Stark
  (See online at https://doi.org/10.1103/physreve.84.041924)
• Non-equilibrium structure of rotationally driven dipoles: the role of the simulation method, Magnetohydrodynamics 47, 135 (2011)
  S. Jäger and S. H. L. Klapp
  (See online at https://doi.org/10.22364/mhd.47.2.4)
• Pattern formation of dipolar colloids in rotating fields: layering and synchronization, Soft Matter 7, 6606 (2011)
  S. Jäger and S. H. L. Klapp
  (See online at https://doi.org/10.1039/c1sm05343d)
• Ultrafast dynamics of carrier multiplication in quantum dots, Phys. Rev. B 84, 125318 (2011)
  F. Schulze, M. Schoth, U. Woggon, A. Knorr, and C. Weber
  (See online at https://doi.org/10.1103/physrevb.84.125318)
• Ultrafast dynamics of carrier multiplication in quantum dots, Phys. Rev. B 84, 125328 (2011)
  F. Schulze, M. Schoth, U. Woggon, A. Knorr, and C. Weber
  (See online at https://doi.org/10.1103/physrevb.84.125318)
• A stochastic description of Dictyostelium chemotaxis, PLoS ONE. 7, e37213 (2012)
  G. Anselem, M. Theves, A. Bae, E. Bodenschatz, and C. Beta
  (See online at https://doi.org/10.1371/journal.pone.0037213)
• Actin Filament Elasticity and Retrograde Flow Shape the Force-Velocity Relation of Motile Cells, Biophys. J. 102, 287 (2012)
  J. Zimmermann, C. Brunner, M. Enculescu, M. Gogler, A. Ehrlicher, J. Käs, and M. Falcke
  (See online at https://doi.org/10.1016/j.bpj.2011.12.023)
• Bunching and antibunching in electronic transport, Phys. Rev. B 85, 165417 (2012)
  C. Emary, C. Pöltl, A. Carmele, J. Kabuss, A. Knorr, and T. Brandes
  (See online at https://doi.org/10.1103/physrevb.85.165417)
• Coherent phenomena and control in quantum transport: Correlations, dark states and control in the transport through coupled quantum dots, Ph.D. thesis, TU Berlin (2012)
  C. Pöltl
  (See online at https://doi.org/10.14279/depositonce-3333)
• Collective dynamics of model microorganisms with chemotactic signaling, Phys. Rev. E 85, 051901 (2012)
  J. Taktikos, V. Zaburdaev, and H. Stark
  (See online at https://doi.org/10.1103/physreve.85.051901)
• Combining nanooptical fields and coherent spectroscopy on systems with delocalized excitons, Proc. SPIE 8260, 82601V (2012)
  F. Schlosser, M. Schoth, K. Hiremath, S. Burger, F. Schmidt, A. Knorr, S. Mukamel, and M. Richter
  (See online at https://doi.org/10.1117/12.906671)
• Complex dynamics of semiconductor quantum dot lasers subject to delayed optical feedback, Int. J. Bif. Chaos 22, 1250246 (2012)
  C. Otto, B. Globisch, K. Lüdge, E. Schöll, and T. Erneux
  (See online at https://doi.org/10.1142/s021812741250246x)
• Complex Intramolecular Mechanics of G-actin – An Elastic Network Study, PLoS ONE 7, e45859 (2012)
  M. Düttmann, M. Mittnenzweig, Y. Togashi, T. Yanagida, and A. S. Mikhailov
  (See online at https://doi.org/10.1371/journal.pone.0045859)
• Control Parameter Description of Eukaryotic Chemotaxis, Phys. Rev. Lett. 109, 108103 (2012)
  G. Anselem, M. Theves, A. Bae, C. Beta, and E. Bodenschatz
  (See online at https://doi.org/10.1103/physrevlett.109.108103)
• Criticality in Transport through the Quantum Ising Chain, Phys. Rev. Lett. 109, 240402 (2012)
  M. Vogl, G. Schaller, and T. Brandes
  (See online at https://doi.org/10.1103/physrevlett.109.240402)
• Cytoplasmic streaming in plant cells: the role of wall slip, J. Roy. Soc. Interface 9, 1398 (2012)
  K. Wolff, D. Marenduzzo, M. Cates
  (See online at https://doi.org/10.1098/rsif.2011.0868)
• Delay induced dynamics and jitter reduction of passively mode-locked semiconductor laser subject to optical feedback, New J. Phys. 14, 113033 (2012)
  C. Otto, K. Lüdge, A. G. Vladimirov, M. Wolfrum, and E. Schöll
  (See online at https://doi.org/10.1088/1367-2630/14/11/113033)
• Dynamics of interacting transport qubits, Phys. Rev. B 85, 245431 (2012)
  C. Nietner, G. Schaller, C. Pöltl, T. Brandes
  (See online at https://doi.org/10.1103/physrevb.85.245431)
• Elastic Network Models of Proteins-Uncovering the Internal Mechanics of Actin and Myosin, Ph.D. thesis, TU Berlin (2012)
  M. Düttmann
  
• Equation-of-motion method for full counting statistics: Steady-state superradiance, Phys. Rev. A 86, 033820 (2012)
  M. Vogl, G. Schaller, E. Schöll, and T. Brandes
  (See online at https://doi.org/10.1103/physreva.86.033820)
• Exciton acoustic-phonon coupling in single GaN/AlN quantum dots, Phys. Rev. B 85, 081303 (2012)
  I. A. Ostapenko, G. Hönig, S. Rodt, A. Schliwa, A. Hoffmann, D. Bimberg, M.- R. Dachner, M. Richter, A. Knorr, S. Kako, and Y. Arakawa
  (See online at https://doi.org/10.1103/physrevb.85.081303)
• Feedback Control of Flow Alignment in a Sheared Liquid Crystal, AIP Conf. Proc. 1493, 552 (2012)
  D. A. Strehober, E. Schöll, and S. H. L. Klapp
  (See online at https://doi.org/10.1063/1.4765541)
• Front propagation in one-dimensional spatially periodic bistable media, Phys. Rev. E 86, 066210 (2012)
  J. Löber, M. Bär, and H. Engel
  (See online at https://doi.org/10.1103/physreve.86.066210)
• Impact of the carbazole derivative wiskostatin on mechanical stability and dynamics of motile cells, J. Muscle Res. Cell Motil. 33, 95 (2012)
  E. K. B. Pfannes, M. Theves, C. Wegner, and C. Beta
  (See online at https://doi.org/10.1007/s10974-012-9287-8)
• Induced surface enhancement in coral Pt island films attached to nanostructured Ag electrodes, Langmuir 28, 5819 (2012)
  K. Ly, C. Köhler, A. Fischer, J. Kabuss, F. Schlosser, M. Schoth, A. Knorr, and I.M. Weidinger
  (See online at https://doi.org/10.1021/la205139g)
• Influence of carrier lifetimes on the dynamical behavior of quantum-dot lasers subject to optical feedback, Phys. Rev. E 86, 046201 (2012)
  B. Globisch, C. Otto, E. Schöll, and K. Lüdge
  (See online at https://doi.org/10.1103/physreve.86.046201)
• Is spreading depolarization characterized by an abrupt, massive release of gibbs free energy from the human brain cortex?, Neuroscientist 19, 25 (2012)
  J. P. Dreier, T. M. Isele, C. Reiffurth, S. A. Kirov, M. A. Dahlem, and O. Herreras
  (See online at https://doi.org/10.1177/1073858412453340)
• Line Narrowing of Excited-State Transitions in Nonlinear Polarization Spectroscopy: Application to Water-Soluble Chlorophyll-Binding Protein, Phys. Rev. Lett. 108, 178104 (2012)
  M. Schoth, M. Richter, A. Knorr, and T. Renger
  (See online at https://doi.org/10.1103/physrevlett.108.178104)
• Myosin-V as a Mechanical Sensor: An Elastic Network Study, Biophys. J. 102, 541 (2012)
  M. Düttmann, Y. Togashi, T. Yanagida, and A. S. Mikhailov
  (See online at https://doi.org/10.1016/j.bpj.2011.12.013)
• Nonequilibrium condensation and coarsening of field-driven dipolar colloids, Phys. Rev. E 86, 011402 (2012)
  S. Jäger, H. Schmidle, and S. H. L. Klapp
  (See online at https://doi.org/10.1103/physreve.86.011402)
• Nonequilibrium dynamics and self-organization in field-driven dipolar colloidal particles, Ph.D. thesis, TU Berlin (2012)
  S. Jäger
  (See online at https://doi.org/10.14279/depositonce-3527)
• On the properties of a variant of the Riccati system of equations, J. Phys. A 45, 415101 (2012)
  A. Sarkar, P. Guha, A. Ghose-Choudhury, J. K. Bhattacharjee, A. K. Mallik, and P. G. L. Leach
  (See online at https://doi.org/10.1088/1751-8113/45/41/415101)
• Optically injected quantum dot lasers — impact of nonlinear carrier lifetimes on frequency locking dynamics, New J. Phys. 14, 053018 (2012)
  J. Pausch, C. Otto, E. Tylaite, N. Majer, E. Schöll, and K. Lüdge
  (See online at https://doi.org/10.1088/1367-2630/14/5/053018)
• Photon statistics and entanglement in phonon-assisted quantum light emission from semiconductor quantum dots in Quantum Optics with Semiconductor Nanostructures, Woodhead Publishing, (2012)
  A. Carmele, M.-R. Dachner, J. Kabuss, M. Richter, F. Milde, and A. Knorr
  (See online at https://doi.org/10.1533/9780857096395.3.253)
• Quantum dot laser tolerance to optical feedback, in Nonlinear Laser Dynamics — From Quantum Dots to Cryptography, chapter 6, pp. 141–162, (Wiley-VCH, Weinheim, 2012)
  C. Otto, K. Lüdge, E. A. Viktorov, and T. Erneux
  (See online at https://doi.org/10.1002/9783527639823.ch6)
• Reconstruction of the wave functions of coupled nanoscopic emitters using a coherent optical technique, Phys. Rev. B 86, 085308 (2012)
  M. Richter, F. Schlosser, M. Schoth, S. Burger, F. Schmidt, A. Knorr, and S. Mukamel
  (See online at https://doi.org/10.1103/physrevb.86.085308)
• Renormalization Group and isochronous oscillators, Eur. Phys. J. D 66, 1 (2012)
  A. Sarkar and J. K. Bhattacharjee
  (See online at https://doi.org/10.1140/epjd/e2012-20427-8)
• Rotational ratchets with dipolar interactions, Phys. Rev. E 86, 061402 (2012)
  S. Jäger and S. H. L. Klapp
  (See online at https://doi.org/10.1103/physreve.86.061402)
• Stable rectangular pulses supported by a quantum dot optical amplifier, Phys. Status Solidi RRL 6, 463 (2012)
  M.-R. Dachner, P. Paulau, H. Engel, and A. Knorr
  (See online at https://doi.org/10.1002/pssr.201206450)
• A bacterial swimmer with two alternating speeds of propagation, Biophys. J. 105, 1915 (2013)
  M. Theves, J. Taktikos, V. Zaburdaev, H. Stark, and C. Beta
  (See online at https://doi.org/10.1016/j.bpj.2013.08.047)
• An Active Poroelastic Model for Cytoplasm and Pattern Formation in Protoplasmic Droplets of Physarum Polycephalum, Ph.D. thesis, Physikalisch Technische Bundesanstalt (2013)
  M. Radszuweit
  (See online at https://doi.org/10.14279/depositonce-3594)
• Analytical approximations for spiral waves, Chaos 23, 043135 (2013)
  J. Löber and H. Engel
  (See online at https://doi.org/10.1063/1.4848576)
• Collective and critical effects in bosonic transport, Ph.D. thesis, TU Berlin (2013)
  M. Vogl
  (See online at https://doi.org/10.14279/depositonce-3519)
• Dynamics of cluster formation in driven dipolar colloids dispersed on a monolayer, J. Phys.: Condens. Matter 25, 195104 (2013)
  S. Jäger, H. Stark, and S. H. L. Klapp
  (See online at https://doi.org/10.1088/0953-8984/25/19/195104)
• Dynamics of quantum dot lasers subject to optical feedback and external optical injection, Ph.D. thesis, TU Berlin (2013)
  C. Otto
  (See online at https://doi.org/10.14279/depositonce-3711)
• Feedback control of flow alignment in sheared liquid crystals, Phys. Rev. E 88, 062509 (2013)
  D. A. Strehober, E. Schöll, and S. H. L. Klapp
  (See online at https://doi.org/10.1103/physreve.88.062509)
• How the Motility Pattern of Bacteria Affects Their Dispersal and Chemotaxis, PLOS ONE 8, e81936 (2013)
  J. Taktikos, H. Stark, and V. Zaburdaev
  (See online at https://doi.org/10.1371/journal.pone.0081936)
• Intracellular mechanochemical waves in an active poroelastic model, Phys. Rev. Lett. 110, 138102 (2013)
  M. Radszuweit, S. Alonso, H. Engel, and M. Bär
  (See online at https://doi.org/10.1103/physrevlett.110.138102)
• Influence of phonons on light emission and propagation in semiconductor nano optics, Ph.D. thesis, TU Berlin (2013)
  M.-R. Dachner,
  (See online at https://doi.org/10.14279/depositonce-3848)
• Modeling the random walk and chemotaxis of bacteria: Aspects of biofilm formation, Ph.D. thesis, TU Berlin (2013)
  J. Taktikos
  (See online at https://doi.org/10.14279/depositonce-3477)
• Nonlinear dynamics in colloidal model systems under confined flow, Ph.D. thesis, TU Berlin (2013)
  S. Reddig
  
• Nonlinear dynamics of spherical particles in Poiseuille flow under creeping-flow condition, J. Chem. Phys. 138, 234902, (2013)
  S. Reddig and H. Stark
  (See online at https://doi.org/10.1016/j.bpj.2013.08.047)
• Oscillatory motion of sheared nanorods beyond the nematic phase, Phys. Rev. E 88, 012505 (2013)
  D. A. Strehober, H. Engel, and S. H. L. Klapp
  (See online at https://doi.org/10.1103/physreve.88.012505)
• Polyglycerol-Tagged Molecular Clips as Receptors in Protic Solvents, Eur. J. Org. Chem. 2013, 362 (2013)
  M. Zieringer, M. Casas Cartagena, E. Burakowska, J. Taktikos, K. Neuthe, H. Bandmann, F.-G. Klärner, and R. Haag
  (See online at https://doi.org/10.1002/ejoc.201200345)
• Quantum coherence induces pulse shape modification in a semiconductor optical amplifier at room temperature, Nat. Commun. 4, 2953 (2013)
  M. Kolarczik, N. Owschimikow, J. Korn, B. Lingnau, Y. Kaptan, D. Bimberg, E. Schöll, K. Lüdge, and U. Woggon
  (See online at https://doi.org/10.1038/ncomms3953)
• Rectification of self-propelled particles by symmetric barriers, Phys. Rev. E 87, 042124 (2013)
  A. Pototsky, A. Hahn, and H. Stark
  (See online at https://doi.org/10.1103/physreve.87.042124)
• Sedimentation and orientational order of active bottomheavy particles, Eur. Phys. J. E 36, 43 (2013)
  K. Wolff, A. Hahn, H. Stark
  (See online at https://doi.org/10.1140/epje/i2013-13043-x)
• Spin entangled two-particle dark state in quantum transport through coupled quantum dots, Phys. Rev. B 87, 045416 (2013)
  C. Pöltl, C. Emary, and T. Brandes
  (See online at https://doi.org/10.1103/physrevb.87.045416)
• Stabilization of a scroll ring by a cylindrical Neumann boundary, Phys. Rev. E 88, 062917 (2013)
  P. V. Paulau, J. Löber, and H. Engel
  (See online at https://doi.org/10.1103/physreve.88.062917)
• Thermodynamics of a physical model implementing a Maxwell demon, Phys. Rev. Lett. 110, 040601 (2013)
  P. Strasberg, G. Schaller, T. Brandes, and M. Esposito
  (See online at https://doi.org/10.1103/physrevlett.110.040601)
• Thermodynamics of quantumjump-conditioned feedback control, Phys. Rev. E 88, 062107 (2013)
  P. Strasberg, G. Schaller, T. Brandes, and M. Esposito
  (See online at https://doi.org/10.1103/physreve.88.062107)
• Two-dimensional colloidal networks induced by a uni-axial external field, Soft Matter 9, 2518 (2013)
  H. Schmidle, S. Jäger, C. K. Hall, O. D. Velev, and S. H. L. Klapp
  (See online at https://doi.org/10.1039/c2sm27210e)
• All-optical approach to determine the spatial shape of nanoscale electron wave functions using intraband spectroscopy, Phys. Rev. B 89, 201414(R) (2014)
  S. Kuhn, A. Knorr, M. Richter, N. Owschimikow, M. Kolarczik, Y. I. Kaptan, and U. Woggon
  (See online at https://doi.org/10.1103/physrevb.89.201414)
• An active poroelastic model for mechanochemical patterns in protoplasmic droplets of Physarum polycephalum, PLOS ONE 9, e99220 (2014)
  M. Radszuweit, H. Engel, and M. Bär
  (See online at https://doi.org/10.1371/journal.pone.0099220)
• Bacterial motility and growth in open and confined environments, Ph.D. thesis, Universität Potsdam (2014)
  M. Theves
  
• Control of chemical wave propagation, Engineering of Chemical Complexity 2, 185 (2014)
  J. Löber, R. Coles, J. Siebert, H. Engel, and E. Schöll
  (See online at https://doi.org/10.1142/9789814616133_0011)
• Controlling the position of traveling waves in reaction-diffusion systems, Phys. Rev. Lett. 112, 148305 (2014)
  J. Löber and H. Engel
  (See online at https://doi.org/10.1103/physrevlett.112.148305)
• Crossed excitons in a semiconductor nanostructure of mixed dimensionality, Appl. Phys. Lett. 105, 101108 (2014)
  N. Owschimikow, M. Kolarczik, Y. I. Kaptan, N. B. Grosse, and U. Woggon
  (See online at https://doi.org/10.1063/1.4895558)
• Dynamic clustering and chemotactic collapse of self-phoretic active particles, Phys. Rev. Lett. 112, 238303 (2014)
  O. Pohl and H. Stark
  (See online at https://doi.org/10.1103/physrevlett.112.238303)
• Dynamics of Quantum Dot Lasers, Springer (2014)
  C. Otto
  (See online at https://doi.org/10.1007/978-3-319-03786-8)
• Gain dynamics of quantum dot devices for dual-state operation, Appl. Phys. Lett. 104, 261108 (2014)
  Y. Kaptan, H. Schmeckebier, B. Herzog, D. Arsenijević, M. Kolarczik, V. Mikhelashvili, N. Owschimikow, G. Eisenstein, D. Bimberg, and U. Woggon
  (See online at https://doi.org/10.1063/1.4885383)
• Geometry-driven polarity in motile amoeboid cells, PLOS ONE 9, e113382 (2014)
  O. Nagel, C. Guven, M. Theves, M. Driscoll, W. Losert, and C. Beta
  (See online at https://doi.org/10.1371/journal.pone.0113382)
• Impact of amplitude-phase coupling on optical feedback induced timing jitter reduction in passively mode-locked lasers, Laser Optics, 2014 International Conference
  L. C. Jaurigue, K. Lüdge, and E. Schöll
  (See online at https://doi.org/10.1109/lo.2014.6886296)
• Markovian transport through few-level quantum systems, Ph.D. thesis, TU Berlin (2014)
  C. Nietner
  
• Modeling crawling cell movement on soft engineered substrates, Soft Matter 10, 1365 (2014)
  J. Löber, F. Ziebert, and I. S. Aranson
  (See online at https://doi.org/10.1039/c3sm51597d)
• Nonequilibrium relaxation transport of ultracold atoms, Phys. Rev. A 90, 033614 (2014)
  F. G. Gallego-Marcos, G. Platero, C. Nietner, G. Schaller, and T. Brandes
  (See online at https://doi.org/10.1103/physreva.90.033614)
• Optimization of Timing Jitter Reduction by Optical Feedback for a Passively Mode-Locked Laser, IEEE Photon. J. 6, 1501814 (2014)
  C. Otto, L. C. Jaurigue, E. Schöll, and K. Lüdge
  (See online at https://doi.org/10.1109/jphot.2014.2352934)
• Passively mode-locked lasers subject to optical feedback: The role of amplitude-phase coupling, NUSOD 2014, 147 (2014)
  L. C. Jaurigue, E. Schöll, and K. Lüdge
  (See online at https://doi.org/10.1109/nusod.2014.6935399)
• Phase-field describtion of substrate-based motility of eukaryotic cells, Engineering of Chemical Complexity 2, 93 (2014)
  I. S. Aranson, J. Löber, and F. Ziebert
  (See online at https://doi.org/10.1142/9789814616133_0006)
• Predicting modes of operation in quantum dot mode-locked lasers using a delay differential equation model, Proc. SPIE 9134, Semiconductor Lasers and Laser Dynamics VI, 91342K (2014)
  L. C. Jaurigue, F. Grillot, E. Schöll, and K. Lüdge
  (See online at https://doi.org/10.1117/12.2066107)
• Pump-probe quantum state tomography in a semiconductor optical amplifier, Opt. Express 22, 32520 (2014)
  N. B. Grosse, N. Owschimikow, R. Aust, B. Lingnau, A. Koltchanov, M. Kolarczik, K. Lüdge, and U. Woggon
  (See online at https://doi.org/10.1364/oe.22.032520)
• Quantifying the degree of persistence in random amoeboid motion based on the Hurst exponent of fractional Brownian motion, Phys. Rev. E 90, 042703 (2014)
  N. Makarava, S. Menz, M. Theves, W. Huisinga, C. Beta, and M. Holschneider
  (See online at https://doi.org/10.1103/physreve.90.042703)
• Quantum Criticality and Dynamical Instability in the Kicked-Top Model, Phys. Rev. Lett. 112, 140408 (2014)
  V. M. Bastidas, P. Perez-Fernandez, M. Vogl, and T. Brandes
  (See online at https://doi.org/10.1103/physrevlett.112.140408)
• Relaxation dynamics of meso-reservoirs, New J. Phys. 16, 125011 (2014)
  G. Schaller, C. Nietner, and T. Brandes
  (See online at https://doi.org/10.1088/1367-2630/16/12/125011)
• Second laws for an information driven current through a spin valve, Phys. Rev. E 90, 062107 (2014)
  P. Strasberg, G. Schaller, T. Brandes, and C. Jarzynski
  (See online at https://doi.org/10.1103/physreve.90.062107)
• Self-induced polar order of active Brownian particles in a harmonic trap, Phys. Rev. Lett. 112, 238104 (2014)
  M. Hennes, K. Wolff, and H. Stark
  (See online at https://doi.org/10.1103/physrevlett.112.238104)
• Shaping wave patterns in reaction-diffusion systems, Phys. Rev. E 90, 062911 (2014)
  J. Löber, S. Martens, and H. Engel
  (See online at https://doi.org/10.1103/physreve.90.062911)
• Single-cell mRNA transfection studies: Delivery, kinetics and statistics by numbers, Nanomedicine 10, 679 (2014)
  C. Leonhardt, G. Schwake, T. R. Stögbauer, S. Rappl, J.-T. Kuhr, T. S. Ligon, and J. O. Rädler
  (See online at https://doi.org/10.1016/j.nano.2013.11.008)
• Stability of position control of traveling waves in reaction-diffusion systems, Phys. Rev. E 89, 062904 (2014)
  J. Löber
  (See online at https://doi.org/10.1103/physreve.89.062904)
• Stability of quantum-dot excited-state laser emission under simultaneous ground-state perturbation, Appl. Phys. Lett. 105, 191105 (2014)
  Y. Kaptan, A. Röhm, B. Herzog, B. Lingnau, H. Schmeckebier, D. Arsenijević, V. Mikhelashvili, O. Schöps, M. Kolarczik, G. Eisenstein, D. Bimberg, U. Woggon, N. Owschimikow, and K. Lüdge
  (See online at https://doi.org/10.1063/1.4901051)
• Theory of excitation transfer in nanostructures influenced by vibrational modes, Ph.D. thesis, TU Berlin (2014)
  M. Schoth
  
• Transport as a sensitive indicator of quantum criticality, New J. Phys. 26, 265001 (2014)
  G. Schaller, M. Vogl, and T. Brandes
  (See online at https://doi.org/10.1088/0953-8984/26/26/265001)
• Transport with ultracold atoms at constant density, Phys. Rev. A 89, 013605 (2014)
  C. Nietner, G. Schaller, and T. Brandes
  (See online at https://doi.org/10.1103/physreva.89.013605)
• Vortex Arrays and Mesoscale Turbulence of Self-Propelled Particles, Phys. Rev. Lett. 113, 258104 (2014)
  R. Großmann, P. Romanczuk, M. Bär, and L. Schimansky-Geier
  (See online at https://doi.org/10.1103/physrevlett.113.258104)
• A geometric approach to self-propelled motion in isotropic and anisotropic environments, Eur. Phys. J. ST 224, 1377 (2015)
  R. Großmann, F. Peruani, and M. Bär
  (See online at https://doi.org/10.1140/epjst/e2015-02465-0)
• Advanced control schemes for passively mode-locked lasers: Coupled lasers and dual-feedback approaches, NUSOD 2015, 123 (2015)
  L. C. Jaurigue, B. Lingnau, and K. Lüdge
  (See online at https://doi.org/10.1109/nusod.2015.7292853)
• Cardiac contraction induces discordant alternans and localized block, Phys. Rev. E 91, 022703 (2015)
  M. Radszuweit, E. Alvarez-Lacalle, M. Bär, and B. Echebarria
  (See online at https://doi.org/10.1103/physreve.91.022703)
• Collisions of deformable cells lead to collective migration, Sci. Rep. 5, 9172 (2015)
  J. Löber, F. Ziebert, and I. S. Aranson
  (See online at https://doi.org/10.1038/srep09172)
• Detection of Nonsecular Relaxation in Nanoscopic Systems, Ph.D. thesis, TU Berlin (2015)
  M. Krecik
  (See online at https://doi.org/10.14279/depositonce-5067)
• Excitation waves on complex networks, Ph.D. thesis, TU Berlin (2015)
  T. Isele
  
• Exciton dynamics probe the energy structure of a quantum dot-in-a-well system: The role of Coulomb attraction and dimensionality, Phys. Rev. B 91, 235310 (2015)
  M. Kolarczik, N. Owschimikow, B. Herzog, F. Buchholz, Y. I. Kaptan, and U. Woggon
  (See online at https://doi.org/10.1103/physrevb.91.235310)
• Fast gain and phase recovery of semiconductor optical amplifiers based on submonolayer quantum dots, Appl. Phys. Lett. 107, 201102 (2015)
  B. Herzog, N. Owschimikow, J.-H. Schulze, R. Rosales, Y. Kaptan, M. Kolarczik, T. Switaiski, A. Strittmatter, D. Bimberg, U. W. Pohl, and U. Woggon
  (See online at https://doi.org/10.1063/1.4935792)
• Frequency-dependent selection at rough expanding fronts, New J. Phys. 17, 103035 (2015)
  J.-T. Kuhr and H. Stark
  (See online at https://doi.org/10.1088/1367-2630/17/10/103035)
• Front propagation in channels with spatially modulated cross section, Phys. Rev. E 91, 022902 (2015)
  S. Martens, J. Löber, and H. Engel
  (See online at https://doi.org/10.1103/physreve.91.022902)
• Hydrodynamic Segregation in a Bidisperse Colloidal Suspension in Microchannel Flow: A Theoretical Study, J. Chem. Phys. 142, 214901 (2015)
  P. Kanehl and H. Stark
  (See online at https://doi.org/10.1063/1.4921800)
• Internal friction in peptide kinetics, Ph.D. thesis, FU Berlin (2015)
  J. Schulz
  (See online at https://dx.doi.org/10.17169/refubium-11218)
• Optimal trajectory tracking, Ph.D. thesis, TU Berlin (2015)
  J. Löber
  (See online at https://doi.org/10.14279/depositonce-4926)
• Particle Transport through Hydrogels Is Charge Asymmetric, Biophys. J. 108, 530 (2015)
  X. Zhang, J. Hansing, R. R. Netz, J. E. DeRouchey
  (See online at https://doi.org/10.1016/j.bpj.2014.12.009)
• Passively mode-locked laser coupled to two external feedback cavities, Proc. SPIE 9134, Novel In-Plane Semiconductor Lasers XIV, 93820B (2015)
  L. C. Jaurigue, E. Schöll, and K. Lüdge
  (See online at https://doi.org/10.1117/12.2076118)
• Pattern formation in active particle systems due to competing alignment interactions, Eur. Phys. J. ST 224, 1325 (2015)
  R. Großmann, P. Romanczuk, M. Bär, and L. Schimansky-Geier
  (See online at https://doi.org/10.1140/epjst/e2015-02462-3)
• Phonon-Induced Ultrafast Relaxation Processes and Local Enhancement of Electric Fields: A Theoretical Work on Semiconducting Carbon Nanotubes and Nanostructured Electrodes, Ph.D. thesis, TU Berlin (2015)
  C. Köhler
  (See online at https://doi.org/10.14279/depositonce-5028)
• Pili-induced clustering of N. gonorrhoeae bacteria, PLOS ONE 10, e0137661 (2015)
  J. Taktikos, Y. T. Lin, H. Stark, N. Biais, and V. Zaburdaev
  (See online at https://doi.org/10.1371/journal.pone.0137661)
• Random walk patterns of a soil bacterium in open and confined environments, Europhys. Lett. 109, 28007 (2015)
  M. Theves, J. Taktikos, V. Zaburdaev, H. Stark, and C. Beta
  (See online at https://doi.org/10.1209/0295-5075/109/28007)
• Realistic models of the electrical excitation in the human heart and the determination of the cardiac magnetic field, Ph.D. thesis, TU Berlin (2015)
  S. Fruhner
  
• Self-phoretic active particles interacting by diffusiophoresis: A numerical study of the collapsed state and dynamic clustering, Eur. Phys. J. E 38, 93 (2015)
  O. Pohl and H. Stark
  (See online at https://doi.org/10.1140/epje/i2015-15093-4)
• Shear-induced Phenomena of a Collapsed Polymer, Ph.D. thesis, FU Berlin (2015)
  M. Radtke
  (See online at https://dx.doi.org/10.17169/refubium-16673)
• Swimming patterns of a polarly flagellated bacterium in environments of increasing complexity, Eur. Phys. J. ST 224, 1185 (2015)
  M. Raatz, M. Hintsche, M. Bahrs, M. Theves, and C. Beta
  (See online at https://doi.org/10.1140/epjst/e2015-02454-3)
• Thermodynamics and Information Processing at the Nanoscale, Ph.D. thesis, TU Berlin (2015)
  P. Strasberg
  (See online at https://doi.org/10.14279/depositonce-4958)
• Thermodynamics of stochastic Turing machines, Phys. Rev. E 92, 042104 (2015)
  P. Strasberg, J. Cerrillo, G. Schaller, and T. Brandes
  (See online at https://doi.org/10.1103/physreve.92.042104)
• Timing jitter of passively mode-locked semiconductor lasers subject to optical feedback; a semi-analytic approach, Phys. Rev. A 92, 053807 (2015)
  L. C. Jaurigue, A. S. Pimenov, D. Rachinskii, E. Schöll, K. Lüdge, and A. G. Vladimirov
  (See online at https://doi.org/10.1103/physreva.92.053807)
• Active Brownian particles and run-and-tumble particles separate inside a maze, Sci. Rep. 6, 37670 (2016)
  M. Khatami, K. Wolff, O. Pohl, M. R. Ejtehadi, and H. Stark
  (See online at https://doi.org/10.1038/srep37670)
• Binary mixtures of rod-like colloids under shear: microscopically-based equilibrium theory and order-parameter dynamics, J. Phys. Condens. Matter 28, 244022 (2016)
  R. Lugo-Frías and S. H. L. Klapp
  (See online at https://doi.org/10.1088/0953-8984/28/24/244022)
• Binary mixtures of rod-like colloids: mesoscopic equilibrium theory and shear induced instabilities, Ph.D. thesis, TU Berlin (2016)
  R. Lugo-Frias
  (See online at https://doi.org/10.14279/depositonce-5535)
• Chemotaxis of self-phoretic active particles and bacteria, Ph.D. thesis, TU Berlin (2016)
  O. Pohl
  (See online at https://doi.org/10.14279/depositonce-5409)
• Controlling the stability of steady states in continuous variable quantum systems, in Control of Self-Organizing Nonlinear Systems, Springer International Publishing, 289 (2016)
  P. Strasberg, G. Schaller, and T. Brandes
  (See online at https://doi.org/10.1007/978-3-319-28028-8_15)
• Diffusion properties of active particles with directional reversal, New J. Phys. 18, 043009 (2016)
  R. Großmann, F. Peruani, and M. Bär
  (See online at https://doi.org/10.1088/1367-2630/18/4/043009)
• Driven open quantum systems and Floquet stroboscopic dynamics, Phys. Rev. Lett. 117, 250401 (2016)
  S. Restrepo, J. Cerrillo, V. M. Bastidas, D. G. Angelakis, and T. Brandes
  (See online at https://doi.org/10.1103/physrevlett.117.250401)
• Dynamics and Stochastic Properties of Passively Mode-Locked Semiconductor Lasers Subject to Optical Feedback, Ph.D. thesis, TU Berlin (2016)
  L. C. Jaurigue
  (See online at https://doi.org/10.14279/depositonce-5543)
• Dynamics of a passively mode-locked semiconductor laser subject to dual-cavity optical feedback, Phys. Rev. E 93, 022205 (2016)
  L. C. Jaurigue, O. Nikiforov, E. Schöll, S. Breuer, and K. Lüdge
  (See online at https://doi.org/10.1103/physreve.93.022205)
• Efficient numerical method for calculating Coulomb coupling elements and its application to two-dimensional spectroscopy, Proc. SPIE 9746, Ultrafast Phenomena and Nanophotonics XX, 97461D (2016)
  A. Zimmermann, S. Kuhn, and M. Richter
  (See online at https://doi.org/10.1117/12.2207636)
• Experimental demonstration of change of dynamical properties of a passively mode-locked semiconductor laser subject to dual optical feedback by dual full delay-range tuning, Opt. Express 24, 14301 (2016)
  O. Nikiforov, L. C. Jaurigue, L. Drzewietzki, K. Lüdge, and S. Breuer
  (See online at https://doi.org/10.1364/oe.24.014301)
• Long-Lived Valley Polarization of Intravalley Trions in Monolayer WSe2, Phys. Rev. Lett. 117, 257402 (2016)
  A. Singh, K. Tran, M. Kolarczik, J. Seifert, Y. Wang, K. Hao, D. Pleskot, N. M. Gabor, S. Helmrich, N. Owschimikow, U. Woggon, and X. Li
  (See online at https://doi.org/10.1103/physrevlett.117.257402)
• Mesoscale pattern formation of self-propelled rods with velocity reversal, Phys. Rev. E 94, 050602, (2016)
  R. Großmann, F. Peruani, and M. Bär
  (See online at https://doi.org/10.1103/physreve.94.050602)
• Modeling Contact Inhibition of Locomotion of Colliding Cells Migrating on Micropatterned Substrates, PLoS Comput. Biol. 12, e1005239 (2016)
  D. A. Kulawiak, B. A. Camley, and W.-J. Rappel
  (See online at https://doi.org/10.1371/journal.pcbi.1005239)
• Nanoparticle filtering in charged hydrogels: Effects of particle size, charge asymmetry and salt concentration, Eur. Phys. J. E Soft Matter 39, 53 (2016)
  J. Hansing, C. Ciemer, W. K. Kim, X. Zhang, J. E. DeRouchey, and R. R. Netz
  (See online at https://doi.org/10.1140/epje/i2016-16053-2)
• Non-equilibrium quantum transport coefficients and the transient dynamics of full counting statistics in the strong coupling and non- Markovian regimes, Phys. Rev. B 94, 214308 (2016)
  J. Cerrillo, M. Buser, and T. Brandes
  (See online at https://doi.org/10.1103/physrevb.94.214308)
• Nonequilibrium thermodynamics in the strong coupling and non-Markovian regime based on a reaction coordinate mapping, New J. Phys. 18, 073007 (2016)
  P. Strasberg, G. Schaller, N. Lambert, and T. Brandes
  (See online at https://doi.org/10.1088/1367-2630/18/7/073007)
• On nonequilibrium statistical physics of self-propelled particles: from single-particle transport to emergent macroscopic patterns, Ph.D. thesis, TU Berlin (2016)
  R. Großmann
  
• Oscillations and uniaxial mechanochemical waves in a model of an active poroelastic medium: Application to deformation patterns in protoplasmic droplets of Physarum polycephalum, Physica D 318, 58 (2016)
  S. Alonso, U. Strachauer, M. Radszuweit, M. Bär, and M. J. B. Hauser
  (See online at https://doi.org/10.1016/j.physd.2015.09.017)
• Poisson Green’s function method for increased computational efficiency in numerical calculations of Coulomb coupling elements, Phys. Rev. B 93, 035308 (2016)
  A. Zimmermann, S. Kuhn, and M. Richter
  (See online at https://doi.org/10.1103/physrevb.93.035308)
• Self-Assembly and Self-Organization of Magnetic Janus-like Colloids in Three Dimensions – A Computer Simulation Study, Ph.D. thesis, TU Berlin (2016)
  A. B. Yener
  (See online at https://doi.org/10.14279/depositonce-5900)
• Self-assembly of three-dimensional ensembles of magnetic particles with laterally shifted dipoles, Soft Matter 12, 2066 (2016)
  A. B. Yener and S. H. L. Klapp
  (See online at https://doi.org/10.1039/c5sm02648b)
• Shear banding in nematogenic fluids with oscillating orientational dynamics, Eur. Phys. J. E 39, 88 (2016)
  R. Lugo-Frías, H. Reinken, and S. H. L. Klapp
  (See online at https://doi.org/10.1140/epje/i2016-16088-3)
• Stochastic thermodynamics based on incomplete information: generalized Jarzynski equality with measurement errors with or without feedback, New J. Phys. 18, 113042 (2016)
  C. W. Wächtler, P. Strasberg, and T. Brandes
  (See online at https://doi.org/10.1088/1367-2630/18/11/113042)
• Strong amplitude-phase coupling in submonolayer-quantum-dots, Appl. Phys. Lett. 109, 201102 (2016)
  B. Herzog, B. Lingnau, M. Kolarczik, Y. Kaptan, D. Bimberg, A. Maaßdorf, U. W. Pohl, R. Rosales, J.-H. Schulze, A. Strittmatter, M. Weyers, U. Woggon, K. Lüdge, and N. Owschimikow
  (See online at https://doi.org/10.1063/1.4967833)
• Superdiffusion, large-scale synchronization, and topological defects, Phys. Rev. E 93, 040102(R) (2016)
  R. Großmann, F. Peruani, and M. Bär
  (See online at https://doi.org/10.1103/physreve.93.040102)
• Suppression of Noise-Induced Modulations in Multidelay Systems, Phys. Rev. Lett. 117, 154101 (2016)
  L. C. Jaurigue, E. Schöll, and K. Lüdge
  (See online at https://doi.org/10.1103/physrevlett.117.154101)
• Ultrafast gain recovery and large nonlinear optical response in submonolayer quantum dots, Phys. Rev. B 94, 014305 (2016)
  B. Lingnau, K. Lüdge, B. Herzog, M. Kolarczik, Y. Kaptan, U. Woggon, and N. Owschimikow
  (See online at https://doi.org/10.1103/physrevb.94.014305)
• A polar bundle of flagella can drive bacterial swimming by pushing, pulling, or coiling around the cell body, Sci. Rep. 7, 16771 (2017)
  M. Hintsche, V. Waljor, R. Großmann, M. J. Kühn, K. M. Thormann, F. Peruani, and C. Beta
  (See online at https://doi.org/10.1038/s41598-017-16428-9)
• Active Brownian particles moving in a random Lorentz gas, Eur. Phys. J. E 40, 23 (2017)
  M. Zeitz, K. Wolff, and H. Stark
  (See online at https://doi.org/10.1140/epje/i2017-11510-0)
• Analyzing the spatial positioning of nuclei in polynuclear giant cells, J. Phys. D 50, 464001 (2017)
  M. Stange, M. Hintsche, K. Sachse, M. Gerhardt, A Valleriani, and C. Beta
  (See online at https://doi.org/10.1088/1361-6463/aa8da0)
• Collective sedimentation of squirmers under gravity, Soft Matter 13, 7548 (2017)
  J.-T. Kuhr, J. Blaschke, F. Rühle, and H. Stark
  (See online at https://doi.org/10.1039/c7sm01180f)
• Control of electrical turbulence by periodic excitation of cardiac tissue, Chaos 27, 113110 (2017)
  P. Buran, M. Bär, S. Alonso, and T. Niedermayer
  (See online at https://doi.org/10.1063/1.5010787)
• Dense Colloidal Suspensions in Microchannel Flow, Ph.D. thesis, TU Berlin (2017)
  P. Kanehl
  (See online at https://doi.org/10.14279/depositonce-5804)
• Inferring the chemotactic strategy of P. putida and E. coli using modified Kramers-Moyal coefficients, PLoS Comput. Biol. 13, e1005329 (2017)
  O. Pohl, M. Hintsche, Z. Alirezaeizanjani, M. Seyrich, C. Beta, and H. Stark
  (See online at https://doi.org/10.1371/journal.pcbi.1005329)
• Linewidth rebroadening in quantum dot semiconductor lasers, IEEE J. Sel. Top. Quantum Electron. 23, 1901110 (2017)
  C. Redlich, B. Lingnau, H. Huang, R, Raghunathan, K. Schires, P. J. Poole, F. Grillot, and K. Lüdge
  (See online at https://doi.org/10.1109/jstqe.2017.2701555)
• Mechanochemical pattern formation in simple models of active viscoelastic fluids and solids, J. Phys. D 50, 434004 (2017)
  S. Alonso, M. Radszuweit, H. Engel, and M. Bär
  (See online at https://doi.org/10.1088/1361-6463/aa8a1d)
• Multipulse dynamics of a passively mode-locked semiconductor laser with delayed optical feedback, Chaos 27, 114301 (2017)
  L. C. Jaurigue, B. Krauskopf, and K. Lüdge
  (See online at https://doi.org/10.1063/1.5006743)
• Physical minimal models of amoeboid cell motility, Ph.D. thesis, TU Berlin (2017)
  D. Kulawiak
  (See online at https://doi.org/10.14279/depositonce-6613)
• Quantum and Information Thermodynamics: A Unifying Framework Based on Repeated Interactions, Phys. Rev. X 7, 021003 (2017)
  P. Strasberg, G. Schaller, T. Brandes, and M. Esposito
  (See online at https://doi.org/10.1103/physrevx.7.021003)
• Self-organized velocity pulses of dense colloidal suspensions in microchannel flow, Phys. Rev. Lett. 119, 018002 (2017)
  P. Kanehl and H. Stark
  (See online at https://doi.org/10.1103/physrevlett.119.018002)
• Strong suppression of shot noise in a feedback-controlled single-electron transistor, Nat. Nanotechnol. 12, 218 (2017)
  T. Wagner, P. Strasberg, J. C. Bayer, E. P. Rugeramigabo, T. Brandes, and R. J. Haug
  (See online at https://doi.org/10.1038/nnano.2016.225)
• Biexciton fine structure in monolayer transition metal dichalcogenides, Nat. Phys. 14, 1199 (2018)
  A. Steinhoff, M. Florian, A. Singh, K. Tran, M. Kolarczik, S. Helmrich, A. W. Achtstein, U. Woggon, N. Owschimikow, F. Jahnke, and X. Li
  (See online at https://doi.org/10.1038/s41567-018-0282-x)
• Control of transversal instabilities in reaction-diffusion systems, New J. Phys. 20, 053034 (2018)
  S. Totz, J. Löber, J. F. Totz, and H. Engel
  (See online at https://doi.org/10.1088/1367-2630/aabce5)
• Derivation of a hydrodynamic theory for mesoscale dynamics in microswimmer suspensions, Phys. Rev. E 97, 022613 (2018)
  H. Reinken, S. H. L. Klapp, M. Bär, and S. Heidenreich
  (See online at https://doi.org/10.1103/physreve.97.022613)
• Electronic Maxwell demon in the coherent strong-coupling regime, Phys. Rev. B 97, 195104 (2018)
  G. Schaller, J. Cerrillo, G. Engelhardt, and P. Strasberg
  (See online at https://doi.org/10.1103/physrevb.97.195104)
• Exciton-phonon coupling in mono- and bilayer MoTe2, 2D Mater. 5, 2827 (2018)
  S. Helmrich, R. Schneider, A. W. Achtstein, A. Arora, B. Herzog, S. M. de Vasconcellos, M. Kolarczik, O. Schöps, R. Bratschitsch, U. Woggon, and N. Owschimikow,
  (See online at https://doi.org/10.1088/2053-1583/aacfb7)
• Fermionic reaction coordinates and their application to an autonomous Maxwell demon in the strong coupling regime, Phys. Rev. B 97, 205405 (2018)
  P. Strasberg, G. Schaller, T. L. Schmidt, and M. Esposito
  (See online at https://doi.org/10.1103/physrevb.97.205405)
• From quantum heat engines to laser cooling: Floquet theory beyond the Born-Markov approximation, New J. Phys. 20, 053063 (2018)
  S. Restrepo, J. Cerrillo, P. Strasberg, and G. Schaller
  (See online at https://doi.org/10.1088/1367-2630/aac583)
• Gravity-induced dynamics of a squirmer microswimmer in wall proximity, New J. Phys. 20, 025003 (2018)
  F. Rühle, J. Blaschke, J.-T. Kuhr, and H. Stark
  (See online at https://doi.org/10.1088/1367-2630/aa9ed3)
• How filament density impacts force generation and protrusion rate of lamellipodium in motile cells, Biophys. J. 114, 325a (2018)
  S. Dolati
  (See online at https://doi.org/10.1016/j.bpj.2017.11.1824)
• Hydrodynamic Effects on Particle Diffusion in Polymeric Hydrogels with Steric and Electrostatic Particle-Gel Interactions, Macromolecules 51, 7608 (2018)
  J. Hansing and R. R. Netz
  (See online at https://doi.org/10.1021/acs.macromol.8b01494)
• Modelling excitation coupling in ventricular cardiac myocytes, Ph.D. thesis, HU Berlin (2018)
  J. Vierheller
  (See online at https://doi.org/10.3389/fphys.2015.00255)
• Multiscale modeling and numerical simulation of calcium cycling in cardiac myocytes, Multiscale Model. Simul. 16, 1115 (2018)
  N. Chamakuri, W. Neubert, S. Gilbert, J. Vierheller, G. Warnecke, and M. Falcke
  (See online at https://doi.org/10.1137/17m1121639)
• On the relation between filament density, force generation and protrusion rate in mesenchymal cell motility, Mol. Biol. Cell 29, 2674 (2018)
  S. Dolati, F. Kage, J. Mueller, M. Müsken, M. Kirchner, G. Dittmar, M. Sixt, K. Rottner, and M. Falcke
  (See online at https://doi.org/10.1091/mbc.e18-02-0082)
• Particle Diffusion in Polymeric Hydrogels with Mixed Attractive and Repulsive Interactions, Nano Lett. 18, 5248 (2018)
  J. Hansing, J. R. Duke, E. B. Fryman, J. E. DeRouchey, and R. R. Netz
  (See online at https://doi.org/10.1021/acs.nanolett.8b02218)
• Particle Trapping Mechanisms Are Different in Spatially Ordered and Disordered Interacting Gels, Biophys. J. 114, 2653 (2018)
  J. Hansing and R. R. Netz
  (See online at https://doi.org/10.1016/j.bpj.2018.04.041)
• Particle Trapping Mechanisms in Biological Hydrogels, Ph.D. thesis, FU Berlin (2018)
  J. Hansing
  (See online at https://dx.doi.org/10.17169/refubium-844)
• Sideband pump-probe technique resolves nonlinear modulation response of PbS/CdS quantum dots on a silicon nitride waveguide, APL Photonics 3, 016101 (2018)
  M. Kolarczik, C. Ulbrich, P. Geiregat, Y. Zhu, L.Sagar, A. Singh, B. Herzog, A.W. Achtstein, X. Li, D. van Thourhout, Z. Hens, N. Owschimikow, and U. Woggon
  (See online at https://doi.org/10.1063/1.5005490)
• Statistical parameter inference of bacterial swimming strategies, New J. Phys. 20, 103033 (2018)
  M. Seyrich, Z. Alirezaeizanjani, C. Beta, and H. Stark
  (See online at https://doi.org/10.1088/1367-2630/aae72c)
• Tailoring the mode-switching dynamics in quantum-dot micropillar lasers via time-delayed optical feedback, Opt. Express 26, 22457 (2018)
  S. Holzinger, C. Redlich, B. Lingnau, M. Schmidt, M. von Helversen, J. Beyer, C. Schneider, M. Kamp, S. Höfling, K. Lüdge, X. Porte, and S. Reitzenstein
  (See online at https://doi.org/10.1364/oe.26.022457)
• Unravelling Mirror Properties in Time-Delayed Quantum Feedback Scenarios, J. Mod. Opt. 65 1323 (2018)
  F. Faulstich, M. Kraft, and A. Carmele
  (See online at https://doi.org/10.1080/09500340.2017.1363919)
• Oscillatory motion of a droplet in an active poroelastic two-phase model, J. Phys. D: Appl. Phys. 52, 014004 (2019)
  D. A. Kulawiak, J. Löber, M. Bär, and H. Engel