Project Details
SFB 613: Physics of Single-Molecule Processes and of Molecular Recognition in Organic Systems
Subject Area
Physics
Biology
Chemistry
Biology
Chemistry
Term
from 2002 to 2012
Project identifier
Deutsche Forschungsgemeinschaft (DFG) - Project number 5485220
This research project with interdisciplinary emphasis was initiated to identify and investigate the physical mechanisms which control single-molecule processes in complex organic-chemical and biological molecular systems. This question embraces a complex of problems: molecular structure and functionality, dynamics, the influence of the surroundings on single-molecule processes and the overriding structure formation. Here it is molecular recognition that forms a central principle: a selective, highly specific interaction between molecular species. It enables selection and functionality though recognition of spatial and chemical patterns and can hence be seen as a basis for self-organisation and structure formation. This principle of specific selection, so extremely successful in nature, is based on a combination of a finite number of initially unspecific non-covalent physical interactions which on account of their spatial layout and chemical structure allow specificity, selectiveness and diversity. Examples of such are the regular layout of the S-layer proteins which form the cell cover in bacteria, the V-ATPase-membrane proteins responsible for the transport of protons through membrane or the sequence-specific compounding of proteins to DNA responsible for the regulation of genes. Although such systems have already been investigated physiologically, bio-chemically or molecular-genetically and a picture already exists for the biological function, we are still very far from understanding the molecular interaction mechanisms which play the underlying part in these processes or the overriding principles for structure formation. The objective of this research programme is the more precise investigation of this molecular principle in organic and bioorganic systems by applying a wide range of physical methods: The main emphasis lies on the investigation of specific interactions in DNA-protein-, protein-protein and special organic supra-molecular molecule systems with selective recognition motives and switching molecular compounds. The term single-molecule process refers to the immobilised molecule systems which are free in solution, in a cell or on a surface.
DFG Programme
Collaborative Research Centres
Completed projects
- A02 - Untersuchung der Wechselwirkungen großer Moleküle in Lipidschichten mit Computersimulationen (Project Head Schmid, Friederike )
- A3 - Strukturelle und funktionelle Diversität von S-layern bei Corynebacterium glutamicum (Project Heads Kalinowski, Jörn ; Pühler, Alfred ; Reiss, Günter )
- A04 - Wechselwirkung zwischen heterogenen Makromolekülen und strukturierten Oberflächen: Selektivität und Mustererkennung (Project Heads Degenhard, Andreas ; Schmid, Friederike )
- A05 - Assembly, functional dynamic and regulation of the multi-heteromeric protein complex vacuolar H+-ATPase (Project Heads Dietz, Karl-Josef ; Sauer, Markus ; Seidel, Thorsten )
- A06 - Interaction of single rod-coil-blockcopolymers with nanostructured surfaces (Project Heads Godt, Adelheid ; Gölzhäuser, Armin )
- A08 - Molecular Recognition of Ice Surfaces by Antifreeze Glycoproteins and Synthetic Analogues (Project Heads Doose, Sören ; Koop, Thomas ; Sewald, Norbert )
- A09 - Molecular Recognition of Nucleic Acids with tailored Metal Complexes (Project Heads Glaser, Thorsten ; Sischka, Andy )
- D02 - New migration mechanisms of biomolecules in microfluidic systems (Project Heads Regtmeier, Jan ; Reimann, Peter ; Schmid, Friederike )
- D3 - Ladungstransport in einzelnen Biopolymermolekülen (Project Heads Anselmetti, Dario ; Pühler, Alfred ; Reiss, Günter )
- D04 - Electronic and structural dynamics in molecular adsorbates studied by sub-fs time-resolved streaking in XUV photoemission and fs time-resolved ESCA (Project Heads Heinzmann, Ulrich ; Mattay, Jochen ; Pfeiffer, Walter )
- D05 - 3D-Fluoreszenzmikroskopie zur Untersuchung der Dynamik von selektiven Protein-Protein Wechselwirkungen in lebenden Zellen (Project Heads Niehaus, Karsten ; Nielsen, Tim ; Pühler, Alfred )
- D6 - Strukturierte Immobilisierung einzelner Biomoleküle auf Glasoberflächen mit Submikrometerpipetten (Project Head Sauer, Markus )
- D07 - Investigation of the molecular mechanism of a circadian "slave"oscillator using single-molecule fluorescence spectroscopy and imaging (Project Heads Sauer, Markus ; Staiger, Dorothee )
- D08 - In planta-Visualisierung eines Transkriptionsfaktorkomplexes im Translokationsprozess vom Cytoplasma in den Kern (Project Heads Tinnefeld, Philip ; Weisshaar, Bernd )
- D09 - Dynamische Echtzeitbeobachtung von Protein-Einzelmolekülen mittels Röntgenstrahlung (Project Heads Dietz, Karl-Josef ; Heinzmann, Ulrich ; Kandlbinder, Andrea ; Kleineberg, Ulf )
- D10 - Photocurrent spectroscopy of single molecule junctions (Project Heads Godt, Adelheid ; Pfeiffer, Walter )
- D11 - Time-resolved crystallographic studies of the anion transport in halorhodopsin (Project Heads Heberle, Joachim ; Niemann, Hartmut )
- D12 - Localized Stimulation of Cell Signals with Single Magnetic Nanoparticles (Project Heads Dietz, Karl-Josef ; Herth, Simone ; Reiss, Günter )
- K01 - Kräfte und molekulare Mechanismen der DNA-Protein-Bindung (Project Heads Becker, Anke ; Pühler, Alfred ; Ros, Robert )
- K02 - Association of Peptides and Peptide Analogues to DNA (Project Heads Anselmetti, Dario ; Sewald, Norbert )
- K03 - Single molecule detection and manipulation in spacial and time-space resolution employing magnetic Microsystems (Project Heads Hütten, Andreas ; Mattay, Jochen ; Reiss, Günter )
- K4 - Computersimulation des magnetischen und magnetoresistiven Verhaltens von Vielfachschichten unter dem einfluss von Beads (Project Heads Hütten, Andreas ; Reiss, Günter ; Schepper, Willi )
- K05 - Functionalized Calixarenes and analogues Macrocycles for the Control of Molecular Recognition (Project Heads Anselmetti, Dario ; Mattay, Jochen )
- K06 - Photoinduced dissociation and reaction processes of single molecules in specific organic environments under consideration of quantum chemical calculations (Project Heads Eisfeld, Wolfgang ; Manthe, Uwe )
- K07 - Theory of force spectroscopy for receptor ligand systems (Project Head Reimann, Peter )
- K08 - Functional dynamics of transmembrane proteins studied by surface-enhanced FTIR spectroscopy and single molecule fluorescence imaging (Project Heads Heberle, Joachim ; Sauer, Markus )
- Z01 - Verwaltungsprojekt (Project Head Anselmetti, Dario )
Applicant Institution
Universität Bielefeld
Spokesperson
Professor Dr. Dario Anselmetti