Biometric tools for microarrays

• Applicant: Professor Dr. Hans-Peter Piepho
• Subject Area: Plant Breeding and Plant Pathology
• Term: from 2003 to 2010
• Project identifier: Deutsche Forschungsgemeinschaft (DFG) - Project number 5403793

• Final Report Year: 2010

Final Report Abstract

No abstract available

Publications

• 2005. Is dominance an artefact governed by the choice of scale? Euphytica, Vol. 145. 2005, Issue 1, pp 113-121.
  Keller, B., Piepho H.P.
  (See online at https://dx.doi.org/10.1007/s10681-005-0550-6)
• 2005. Optimal allocation in designs for assessing heterosis from cDNA gene expression data. Genetics, vol. 171. 2005, no. 1, pp. 359-364.
  Piepho H.P.
  (See online at https://dx.doi.org/10.1534/genetics.104.038448)
• 2005. Simultaneous confidence intervals for two estimable functions and their ratio under a linear model. The American Statistician, Vol. 59. 2005, No. 4, pp. 292-300.
  Piepho H.P., Emrich K.
  (See online at https://dx.doi.org/10.1198/000313005X70605)
• 2006. Combining signals from spotted cDNA microarrays obtained at different scanning intensities. Bioinformatics, Vol. 22.2006, Issue 7, Pp. 802-807.
  Piepho H.P., Keller B., Höcker N., Hochholdinger F.
  (See online at https://dx.doi.org/10.1093/bioinformatics/btk047)
• 2006. Manifestation of heterosis during early maize (Zea mays L.) root development. Theoretical and Applied Genetics, Vol. 112. 2006, Issue 3, pp. 421-429.
  Hoecker N., Keller B., Piepho H.P., Hochholdinger F.
  (See online at https://dx.doi.org/10.1007/s00122-005-0139-4)
• 2006. ZmGrp3: identification of a novel marker for root initiation in maize and development of a robust assay to quantify allele-specific contribution to gene expression in hybrids. Theoretical and Applied Genetics, Vol. 113. 2006, Issue 7, pp. 1305-1315.
  Woll K., Dressel A., Sakai H., Piepho H.P., Hochholdinger F.
  (See online at https://dx.doi.org/10.1007/s00122-006-0384-1)
• 2007. Comparative expression profiling in meristems of inbred – hybrid triplets of maize. Plant Molecular Biology, Vol. 63. 2007, Issue 1, pp 21-34.
  Użarowska A., Keller B., Piepho H.P., Schwarz G., Ingvardsen C., Wenzel G., Lübberstedt T.
  (See online at https://dx.doi.org/10.1007/s11103-006-9069-z)
• 2007. Heterosis for biomass-related traits in Arabidopsis investigated by QTL analysis of the triple test cross design with recombinant inbred lines. Genetics, Vol. 177. 2007, no. 3, pp. 1839-1850.
  Kusterer K., Piepho H.P., Schön C.C., Utz H.F., Muminović J., Meyer R.C., Altmann T., Melchinger A.E.
  (See online at https://dx.doi.org/10.1534/genetics.107.077628)
• 2007. Prediction of single-cross hybrid performance in maize using haplotype blocks associated with QTL for grain yield. Theoretical and Applied Genetics, Vol. 114.2007, Issue 8, pp 1345-1355.
  Schrag T.A., Maurer H.P., Melchinger A.E., Piepho H.P., Peleman J., Frisch M.
  (See online at https://dx.doi.org/10.1007/s00122-007-0521-5)
• 2008. Analysis of nonadditive protein accumulation in young primary roots of a maize (Zea mays L.) F1-hybrid compared to its parental inbred lines. Proteomics, Special Issue: Focus on imaging mass sprectrometry, Vol. 8. 2008, Issue 18, pp. 3882–3894.
  Höcker N., Lamkemeyer T., Sarholz B., Fladerer C., Madlung J., Piepho H.P., Nordheim A., Hochholdinger F.
  (See online at https://dx.doi.org/10.1002/pmic.200800023)
• 2008. Comparison of maize (Zea mays) hybrid and parental inbred line primary root transcriptomes suggests organ specific patterns of non-additive gene expression and conserved expression trends between different hybrids in a subset of genes. Genetics, Vol. 179. 2008, no. 3, pp. 1275-1283.
  Höcker N., Keller B., Chollet D., Descombes P., Piepho H.P., Hochholdinger F.
  (See online at https://dx.doi.org/10.1534/genetics.108.088278)
• 2008. Trends in genetic variance components during 30 years of hybrid maize breeding at the University of Hohenheim. Plant Breeding, Vol. 127. 2008, Issue 5, pp. 446–451.
  Fischer S., Möhring J., Schön C.C., Piepho H.P., Klein D., Schipprack W., Utz H.F., Melchinger A.E., Reif J.C.
  (See online at https://dx.doi.org/10.1111/j.1439-0523.2007.01475.x)
• 2009. Impact of genetic divergence on the ratio of variance due to specific versus general combining ability in winter triticale. Crop Science, Vol. 49.2009, No. 6, pp. 2119-2122.
  Fischer S., Möhring J., Maurer H.P., Piepho H.P., Thiemt E.M., Schön C.C., Melchinger A.E., Reif J.C.
  (See online at https://dx.doi.org/10.2135/cropsci2008.12.0689)
• 2009. Molecular marker-based prediction of hybrid performance in maize using unbalanced data from multiple experiments with factorial crosses. Theoretical and Applied Genetics, Vol. 118. 2009, Issue 4, pp. 741-751.
  Schrag T.A., Möhring J., Maurer H.P., Dhillon B.S., Melchinger A.E., Piepho H.P., Sørensen A.P., Frisch M.
  (See online at https://dx.doi.org/10.1007/s00122-008-0934-9)
• 2009. Unravelling epistasis with triple testcross progenies of near isogenic lines. Genetics, Vol. 181. 2009, no. 1, pp. 247-257.
  Reif J., Kusterer B., Piepho H.P., Meyer R.. Altmann T., Schön C., Melchinger A.E.
  (See online at https://dx.doi.org/10.1534/genetics.108.093047)
• 2010. Development of heterotic groups in triticale. Crop Science, Vol. 50. 2010, Issue 2, pp. 584-590.
  Fischer S., Maurer H.P., Würschum T., Möhring J., Piepho H.P., Schön C.C., Thiemt E.M., Dhillon B.S., Melchinger A.E., Reif J.C.
  (See online at https://dx.doi.org/10.2135/cropsci2009.04.0225)
• 2010. Heterosis in early seed development: a comparative study of F1 embryo and endosperm tissues six days after fertilization. Theoretical and Applied Genetics, Vol. 120.2010, Issue 2, pp. 389-400.
  Jahnke S., Sarholz B., Kühr V., Gutierrez-Marcos J.F., Geiger H.H., Piepho H.P., Scholten S.
  (See online at https://dx.doi.org/10.1007/s00122-009-1207-y)
• 2010. Molecular marker assisted broadening of the Central European heterotic groups in rye with Eastern European germplasm. Theoretical and Applied Genetics, Vol. 120. 2010, Issue 2, pp. 291-299.
  Fischer S., Melchinger A.E., Korzun V., Wilde P., Schmiedchen B., Möhring J., Piepho H.P., Dhillon B.S., Würschum T., Reif J.C.
  (See online at https://dx.doi.org/10.1007/s00122-009-1124-0)