Project Details
Unbiased single-cell spatial transcriptomics
Applicant
Dr. Nikolaos Karaiskos
Subject Area
Bioinformatics and Theoretical Biology
Term
from 2018 to 2022
Project identifier
Deutsche Forschungsgemeinschaft (DFG) - Project number 411678873
Final Report Abstract
No abstract available
Publications
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Gene expression cartography. Nature 576, 132–137 (2019)
Nitzan M, Karaiskos N, Friedman N, Rajewsky N
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Kidney single-cell transcriptomes predict spatial cordicomedullary gene expression and tissue osmolarity gradients. JASN 32 (2), 291-306 (2021)
Hinze C, Karaiskos N, Boltengagen A, Walentin K, Redo K, Himmerkus N, Bleich M, Potter SS, Potter AS, Eckardt K-W, Kocks C, Rajewsky N, Schmidt-Ott KM
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NovoSpaRc: flexible spatial reconstruction of single-cell gene expression with optimal transport. Nat Protoc. 16: 4177–4200 (2021)
Moriel N, Senel E, Friedman N, Rajewsky N, Karaiskos N, Nitzan M