Project Details
SFB 1027: Physical Modelling of Non-Equilibrium Processes in Biological Systems
Subject Area
Physics
Biology
Chemistry
Medicine
Biology
Chemistry
Medicine
Term
from 2013 to 2024
Website
Homepage
Project identifier
Deutsche Forschungsgemeinschaft (DFG) - Project number 200049484
Non-equilibrium” is a concept from physics and denotes a state of matter out of thermodynamic equilibrium. Most systems found in nature are not in thermodynamic equilibrium because they are not in stationary states and are continuously and discontinuously subject to flux of matter and energy to and from the systems. Nearly all dynamical processes occurring in living cells consume energy in the form of ATP. Commonly de-noted as “active” processes they are manifestly out-of-equilibrium and include cytoskeleton reorganization, intracellular transport, cell migration and polarization, ion transport across membranes, exocytosis and en-docytosis, calcium oscillations, spikes and waves, and more. On the molecular level ATP consuming pro-cesses include polymerization of actin filaments and microtubules, molecular motor driven transport along cytoskeletal filaments, ion transport across membranes with pumps, kinetic proofreading in protein synthe-sis and T cell receptor signal transduction, and many more. Finally, on a larger scale the aggregation and temporal evolution of protein and bacterial films and tissue formation and remodeling. Active dynamical processes involve the cooperation of many particles, which is why the understanding of collective effects emerging in the interplay of the participating constituents is important. In biological systems the concept of pattern formation is abundant on macroscopic (e.g. during development) as well as on microscopic levels (e.g. actin polymerization, the distribution of adhesive patches on the bacterial cell wall or inter- and intra-cellular calcium waves). As it is obvious that the different phases of water cannot be read off from the properties of a single water molecule alone, it is clear that dynamical phenomena like the formation of lamel-lipodia during cell migration cannot be understood on the basis of individual actin-monomers, molecular motors and nucleators alone. One needs more than the single molecular information (identification, se-quence and structure) to understand the emergence of cellular and subcellular functions, and the identifica-tion, quantitative analysis and theoretical modeling of these cooperative dynamical non-equilibrium phe-nomena, are the central foci of this CRC.
DFG Programme
Collaborative Research Centres
Current projects
- A02 - Dynamics of polarization of T cells and NK cells (Project Heads Hoth, Markus ; Qu, Bin )
- A03 - Physical processes during T cell search, polarization and killing (Project Head Rieger, Heiko )
- A07 - Stochastic approach to active processes and diffusive dynamics in biological environments (Project Heads Santen, Ludger ; Shaebani, Ph.D., M. Reza )
- A09 - Motor-driven transport of intracellular cargo: cooperativity and control (Project Heads Diez, Stefan ; Santen, Ludger )
- A10 - The actin cortex during transitions of cellular states (Project Head Lautenschläger, Franziska )
- A11 - Killing efficiency of cytotoxic T lymphocytes and natural killer cells against cancer cells (Project Head Hoth, Markus )
- A12 - Environmental control of melanocyte differentiation and transformation through cell adhe si-on & mechanics (Project Head Iden, Sandra )
- A13 - The role of MAPs in microtubule lattice dynamics (Project Head Aradilla Zapata, Laura )
- B01 - Modeling biofilms - proteins and bacteria (Project Heads Hähl, Hendrik ; Jacobs, Karin ; Santen, Ludger )
- B02 - Bacterial adhesion and biofilm formation: Physical processes at interfaces (Project Heads Bischoff, Markus ; Herrmann, Mathias ; Jacobs, Karin )
- B03 - Bioinspired control of biofilms on soft and hard oral tissues (Project Head Hannig, Matthias )
- B04 - Microfluidic Platform to Study the Transport Properties of Model Cell Membranes (Project Heads Fleury, Ph.D., Jean-Baptiste ; Seemann, Ralf )
- B06 - Dynamics of ligands and forces in T cell activation (Project Head del Campo Bécares, Aránzazu )
- B07 - Molecular dynamics simulation of large-scale transitions at membranes and interfaces (Project Head Hub, Jochen )
- B08 - Studying bacterial behavioral dynamics in artificial biofilms (Project Head Sankaran, Shrikrishnan )
- C01 - Fluctuations and cooperativity in molecular recognition and development (Project Head Ott, Albrecht )
- C03 - Cellular Reorganization upon state transitions (Project Head Helms, Volkhard )
- C04 - Decoding the functional relevance of compartmentally controlled calcium and redox signaling (Project Heads Bogeski, Ivan ; Niemeyer, Ph.D., Barbara Anne )
- C05 - The role of protein-lipid interactions in fast Ca2+-triggered exocytosis (Project Heads Bruns, Dieter ; Mohrmann, Ralf ; Schwarz, Ph.D., Yvonne )
- C09 - Lipid droplet formation: Cooperative processes governing protein partitioning between mem-branes of distinct physicochemical properties (Project Head Schrul, Bianca )
- C10 - A kinetic proofreading mechanism for sensing lipid saturation (Project Head Ernst, Robert )
- MGK - Integrated Research Training Group (Project Head Jacobs, Karin )
- Z01 - Central tasks (Project Head Rieger, Heiko )
- ZX - Bioinformatics service project (Project Head Helms, Volkhard )
Completed projects
- A01 - Cytoskeletal self-organization and cell signalling (Project Heads Doubrovinski, Konstantin ; Kruse, Karsten )
- A04 - Spontaneous activity in the developing cochlea (Project Head Engel, Jutta )
- A05 - Local cPKC-translocation as a mechanism for localized cell responses (Project Heads Kruse, Karsten ; Lipp, Ph.D., Peter )
- A06 - Dissecting KDEL receptor clustering at the mammalian cell surface in response to cargo binding, internalization and compartmental transport (Project Head Schmitt, Manfred Josef )
- B05 - Aggregation of red blood cells in flow (Project Head Wagner, Christian )
- C02 - DNA-methylation pattern formation: mechanistic analysis and mathematical modeling of epigenetic control (Project Heads Walter, Jörn E. ; Wolf, Verena )
- C06 - Cooperative Action of SNARE Peptides in Fusion (Project Head Böckmann, Rainer )
- C07 - Membrane protein organization studied at the single molecule level using liquid-phase electron microscope (Project Heads De Jonge, Niels ; Niemeyer, Ph.D., Barbara Anne )
Applicant Institution
Universität des Saarlandes
Participating University
Georg-August-Universität Göttingen; Technische Universität Dresden
Participating Institution
Leibniz-Institut für Neue Materialien gGmbH (INM)
Spokesperson
Professor Dr. Heiko Rieger